NONHSAT089909
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089909 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2284 nt |
Genomic location |
chr3+:52312868..52315151 |
Exon number |
1 |
Exons |
52312868..52315151 |
Genome context |
|
Sequence |
000001 CTTGCGCGGG ATTGCAACCC CCGCGAAGAC TCTGGCGCCT CCTGCAGGCG TCCCGATCGC AGGCTGCGTG GGAGGGGGTA 000080
000081 CTGCAGGGTC GGGTATGCTG CTGGAGGCCG GTTTTGGGGG TGACTCAGGT GAGCCGCTCG CAGGCAAGCT TGACCGCTAG 000160 000161 TCCACCGCAG CGTCCGCTTA GACAGCTTCG ACCTCTTTAC TTTTTTTTTT TTTTTTGGAG ATGGAGTCTC TCGCTcaggc 000240 000241 gcgcgccacc acgcccagct aattttgtat ttttggtaga gacgggggtt caccatgttg gccaggctgg tctcgaactc 000320 000321 ctgacctcac ccgcacccgg cctcGTTTTc ttaatcgagg tagactttag gtacagtaaa aatcagcctt tttaggccgg 000400 000401 gcgcggtggc tcacgccttt aaacccacca ctttgggagg ccgaggcggg atgatcgctt gagctcagga gttgagacca 000480 000481 gcctggccaa catgacaaaa ccccacctct actaaaatac aaaaaattag ccgggcatga tggcgcggct gaggcacgag 000560 000561 aattgagaaa ggcggaggct gcagtgcgcc gaaatcgtgc cactgcattc caggctgggc gacagagcag acggtttccc 000640 000641 cccaaaaatt agccttttta gtggctagtt ttatgttctg acacccatac acagtcatgc agtcaccacc acattcaaga 000720 000721 tttggaagag ttgcactatc cTGTTTGTAG TCAACAGGAT TATTTTAAAG GTTCTATCAT ATAAGTGATT ATTTGCCTTA 000800 000801 AAAGAAAGTT TATCTCTAAC AAAGGAAAGC AGTATTTGAA CAGAAAATAG GAACCAAGCT TCCTAACCTT AACTTTCTGG 000880 000881 GCAAGGGGTT AAACTCAATG CCAACCTATG TGGCTTCACA GATCTGTATC TTGTGTGAAG CTCCTCAAAA GGTTAATTGC 000960 000961 CTGGGGTTTC CAACAATGAA GATGGGGATT ATTTATTTTT GCTTTCTTTA GCTAAAGAGA AACAAAAACG AGGAAAGGCT 001040 001041 GTGAGACATT TCAGTCGCTA TTAGGAAGGT TATTATCCAG AGACCTGTGC AATGGTAAAA AACAAAATGG AAACCCTGGG 001120 001121 ACAGTTGGGG TCTTTCTAGA AAGAACTAGA GGCTGTATCC CAACCCCCTG GGTAAAAGGA GAGCCAGGAT CCTTATACAT 001200 001201 AAAGAGAAGT TGTTCTCTAA GGGAAGAGGC AAGTTCCTGG CTAAGTCTGG GGTATAATTG CCTCCTGACA AAGAGCAGAG 001280 001281 CTTCTGGCTA CAATTTGTTC TGGGGTCTGG AAAAAGCCGG TTTGAGTGAA ACCTGAATAG ATGGCAACTT TCCAAACTGC 001360 001361 ACACAATGGA AGAAAAACCC TCCACGTCCC AGATCACTTG CTCTGCTTCC CTGTAATTCC TGTGCCTTTA TTTCAGAAGC 001440 001441 TAGAAAGTCT GATACAGCGT CTGCTTCGAA TAGTTTAGAA GGCAACAAGG ACAGATCGAG TACCATGTTC TAGAACTGTC 001520 001521 GGGAAGTGAA CACACCCAGT AAGATGATGC CATATTTTGG TCCATGTTAA TCTACAAAAA TAACCACAGA AACAGCTGTA 001600 001601 ATCTACTGAA TGTTGCCAGC CAAAATAAAT CTTTGCAGGG TATTTTTCAA GTATTGTACT TCCTATACCT TTTCCAGATT 001680 001681 TCACCGTTAA GACCAAACCT TCCTCCCAAG ACTTGACTTT CTGCATTATT TTTGGAATGC AGTCTTTTTT TTTTTCCCCC 001760 001761 ATTTTTAAGA GGGTCTTCAA ATCCTCATCC TGTTTCGCAT TCTTACTGTT TCCAATTCCT AGCCTGGCTC CCTGCCCTAT 001840 001841 TATAGTGGGG CTCTCCTGGC TTCCAGCCCA ACAGTATGGT TGCCTTAAAG GATGGACTTT AGGCCAGGTG CGGTGgcact 001920 001921 ttgggaggcc gaggtgggta gatcacaagg tcgggagttc aaaaccagcc tggccaaaat ggtgaaaccc tgtctctatt 002000 002001 aaaaatacaa aaattagctg ggcacagtgg cgggcacctg taatcccagc tacttgggag gctgaggcag gagaatcgct 002080 002081 tgaatccggg aggcagaggt tgtagtgagc cgagatcaca ccactgcact gggcattaga gcaagactcc gtctcaaaaa 002160 002161 aaaaaaaaaa aTGGACTTTA AAAAGTGACA CAGAAAGCCG GCTCCAGTGG ATGGGTGGAT GGAGAGAAAG CTGCAGTCAA 002240 002241 GAGTGAATCA GATGGGCTTT AAAAGAGCAT CAGACTTAAT TTTT |
Predicted Small Protein
Name | NONHSAT089909_smProtein_1736:1984 |
Length | 83 |
Molecular weight | 9485.1406 |
Aromaticity | 0.19512195122 |
Instability index | 59.0890243902 |
Isoelectric point | 10.4027709961 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.047429782724 |
Amino acid sequence | MQSFFFSPIFKRVFKSSSCFAFLLFPIPSLAPCPIIVGLSWLPAQQYGCLKGWTLGQVRW HFGRPRWVDHKVGSSKPAWPKW |
Secondary structure | LLLEEELLLLLEEELLLLLEEEEELLLLLLLLLLEEEELLLLLHHHLLLLLLLLLLLLLL LLLLLLEEELLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiii |