NONHSAT090316
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090316 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2083 nt |
Genomic location |
chr3+:67346724..67356783 |
Exon number |
2 |
Exons |
67346724..67346827,67354804..67356783 |
Genome context |
|
Sequence |
000001 AGGATTCCTC ATGGGATGAC AAGGCCTTGC TCCAGGGATG ATGTTTCCCA CTGTAGGAGA ACAGCTACTG TCTTTGATGA 000080
000081 ACTGAGTCTA CAGGGCTATT GAAGGGTCTT GCTGTGCTGC CCAGCCTGGA GTGTGGTGGT GCGATCATGG CTCACTGAAG 000160 000161 CCTCCACTTA CAACTCCTGG ACTCAAGTGA TCCTCCCACC TGAGCCTCCT GAGTAGCTAG GACTATAGGC ACTTGGCACC 000240 000241 ACACCTGGCA AATTTTTTTT ATCATAGGAT CTCGCTACAT TGACCAGGCT GGTCTCAAAC TTCTGGCCCC AAGTGATTTT 000320 000321 CCCACCTCTG CCTCCCAAAG TGCTGAGACT ACAGTCTGGC CCTTCATGAT CTCTAGATAT TACCAAAAGT CCCAGAGAAA 000400 000401 TGAGTGCATG GATGGCTTAA TGACAACCCA CTTTCTTCTC TGGAAGAAAG AACTTAGTAC AGCCCTACCA GAAGGTGGGA 000480 000481 TGGCAATGCC ATCTTCAGAC TTGAGTGTTG GGGAGGCCTT TTCTGCTAAC CAACAGCAAA TGTTTTACAA GAGAAACAGG 000560 000561 ACACACAGTA GATGAAGGCA GCCATGGAAA ATCTGTATGA ATTATCCACT CTGTTGATCT GTGCTTAAAA TATAGAAGGG 000640 000641 AAAGTGAAGA ATAAAATGTG TCCATGAGCA TCCCACCTGG CTTGCATCCA GATTGAACAA TTTGAATGCT AAGAGCAGGA 000720 000721 TTTTGATAGT ATGGCAGACA TTGCTCATTG CTCAGCCAAC CCATTCTCCC CTTTGTCCTT ACTAACAACA TCCTGATTTT 000800 000801 GTGTAGGCAA CAATGCTCCC AGCTAAAATT ACCTACTTTA CCAGACTCCT ATGCAGTTAG AGGTGGCCCA GTAACCCTGG 000880 000881 CAAATAAGAT GCATGCAGGC ATTACTGGAC TGAGCTTCCA AAAACAGCTT TTAAAAGGGG CAGGCTCAAC TGCATGACCC 000960 000961 TTTGGGCTTT TGAACCTCTT TACCTGGAAA TGAGACCTAA AGCTAAAAAT GAAACAACTG TCTTGTTATC ATGAGGTGAC 001040 001041 TATCATGAAG ATGAAAACCT CCACACCAAA TAAGTGGAAA GAAAAGTTGG AAAGAGGTGG AGAGAATGAC TCAATCTTTG 001120 001121 ATGTATCAGT GCTGCATTGC CTCCCTCAAA ATGTCTCAAC TGTTTTATGC AGCTGAGCAA ATTCGTGATC TCAAACAGCA 001200 001201 ACTCAAGCAA CTCCAGGAAA GAAAAAAAAT TGACCACTGG AGGAGATACC TAAGATAATC CTGGTGATAC ATTCGGTGCT 001280 001281 ACAAGAAAAA AATAATCCTC GCACCCAAGA AGAAACAATG AAACCTTATT TTTCATGTAA ATTTCTACTC CTGTTTGGTT 001360 001361 CAAGCATTTG AACTGTTGCA TAAGATTTTT TTGAGTGCCG CTGAGAAAAG TATTATCAAT CTAGAATGCA CCAGAAAGAA 001440 001441 AGCAGCAGAA AGATTACAAA CAGCTTTTCT AAACCCTTGT CCAGCATTTA CCAGAAAGAG CAGCATGAAT TAACAAAAGC 001520 001521 AGAAATTTTA GTTAAAAAAA AAAAGCAACT CAACTCTGAT TCCTGAGACA TATAATACAG GACGTCTATC GCCCATTTAC 001600 001601 CCTCATCCAA CTCAAATGGC TACCAAACTC TAAAATTAGC AGGGCATGTC GGGAAGACTT CTTATTCCTT GTATTACAGA 001680 001681 TCTGTTGACG TGTCAGCAGC ATTTTCCTTT GCAAGTTATA AAATTTCCTT TCCCCAGTCT TCAAATAGGC ACTTCCCCCT 001760 001761 CCCCAAAGTC TCTTTTGTCA CCAACTGCCA TAACCCACCA ATCAGGGAAA CAAATTTCAG TTCATAAAAG AAAACCATGG 001840 001841 GTGACCTACT GAGGACCACA GTTTCATTTC CATAACAAAG ACTGACATAC AACCCATGCC CAAAGTCTGG AACAGCTATG 001920 001921 AATAACTGTG GCTGAATAGT CTATTTTCTG TTGGGATTCA TATCAAACTC TATATTTGAA CTTGAGATAT CAGAACTTTT 002000 002001 GTATTATAAT ACATAAAACC TAGGTAGTGA GTTTGAATTG TCTGCATTTA TTCTCCATGG GTAATAAAAA CTCATTGTTT 002080 002081 CTC |
Predicted Small Protein
Name | NONHSAT090316_smProtein_365:574 |
Length | 70 |
Molecular weight | 8022.0814 |
Aromaticity | 0.101449275362 |
Instability index | 67.5595652174 |
Isoelectric point | 9.35760498047 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0463993405171 |
Amino acid sequence | MISRYYQKSQRNECMDGLMTTHFLLWKKELSTALPEGGMAMPSSDLSVGEAFSANQQQMF YKRNRTHSR |
Secondary structure | LLLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEELLLLLLLHHHHHHHHHHHHH HHHHLLLLL |
PRMN | - |
PiMo | - |