NONHSAT090523
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090523 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2368 nt |
Genomic location |
chr3-:75470089..75484099 |
Exon number |
4 |
Exons |
75470089..75472212,75475601..75475750,75481959..75482021,75484069..75484099 |
Genome context |
|
Sequence |
000001 TCCGTGCTGA AACCCCCGGC GCTCCTGCCA CAGCTTAGAA GCAAAGTTAA GAGACTCATC AGATTCTGAG CTGCTGCGGG 000080
000081 ATATTTTGCA GAAGACGTGC TGTATTGCCC AGAAGCCATC GTGTCGCTGG TCGGGATCCT GCGGAGGCTG GCTGCCTGCT 000160 000161 GGGAGCACCA GCAGTCTCCT GAGGTCTACG TGGCCTTTAC CGTCCACAAC CCAGAGACGT GCCAGCTGTT CACCACCGAG 000240 000241 CTAGGCCGGG CTGGGATCAT ATGGGAAGCG GAAGCTCATC ATGACCAGAA ACTGTTTCCC TATGGAGAGC ACTTGGAGAT 000320 000321 GGCAATGCTG AACCTCACAC TGTAGGACTC ACACACGACT CCAACGGGAT TGTGAGAATC AAGTCAATCT CATGGGAAGA 000400 000401 ATTTTTATAT GGGAAAGCGG ATAAAACTTT CATTGTACTG GAATGTTTGG AGAATGTTAA ATTCCAAATC AGAAACCACA 000480 000481 AACTGCCCTC TAATAAGACA TCGGCTATCT AAGCGTGTGG GTGCCCCCTT TCTGCCAGCA GTTCTGGTTC TTACGAAAAT 000560 000561 CACCATATAT CAGACATGAA AATTCTGGCT TTGTGCAGAT AAAAAAGTGT GTATCAAGTA TGACGTTCCC CCAATGTGGA 000640 000641 CACACTTGGT TCCTCAGAAA GCCAAGCCCA CTGCAGCTGC CACATCCCTG GACACACTCG GTTCCTCACA AAGCCAAGCC 000720 000721 CGCTGCAGCT GTCACATCCC TGGACACACT CGGTTCCTCA CAAAGCCAAG CCCACTGCAG CTGCCACATC CCTGAGCCTA 000800 000801 TGGTGCAGCA GGTGCTTTTT TCAAGACAGG GATCAAAGTG TTAGGAACAC GGCAGAAAGG TGACACCTGG AGACCAAATG 000880 000881 CAGGATGAGG AGTACTGCAG AGGTCACAGG GAAGTCAGAG AACAGTAATA CGCTAACAGG GGCACGGGGC ATGAAGAACA 000960 000961 AAAGACAGGA AGCGTTTCAG AGACTCCAAA GAAGAAATCA GGGCCAACCA CAGCTTCCCG GGTCATTCAC CAGGTGGCAC 001040 001041 CACTGCCGTC ATTTCAGCTT CTGGCCACTG GGAGGCGCTG CTCGAAAGGG TTTGCCCTGA CACTCCAAGA AGCTGCGGGA 001120 001121 AGGACAGCAG GGGCCCTGGG GTTTTAGCCT CTGGCCCAGG AGTTATGTGT CCATAACCAA AGGGAGCACA GTCTGCACCC 001200 001201 AGCTCTCATC CCATCAGAGC TGCTGCGACT CCTGCAGGTT CTTCCGGAAC TGGTTTAGCT TGCCTGCAGG ATCAGGAAAG 001280 001281 TTTGAGAAAA GCATCTGCAA AATACTAAAG AGCAGAGCTT ACCTCATTGC CTGTCCCCAC CCCATCCCAG GTCACCACCT 001360 001361 GGCTGACCCC AGGTCCCCGA CCCAACAACA ACCCCTCCCA AGTCCCTAAC TCCCTCACTT GGACTTGAGA CCCTTCACAC 001440 001441 CCCAGCAGCG CTCCGCCTCC CACTTGACAT CATGCTTTCT GGAAACTTCC CCGTATGTCC CACTTTCCCA CACTTGGTGC 001520 001521 CCTGGAGCAC CTTCCGGCCT CTACATGCTG TACGTTCCCC TGTGAGCACC CTCCTCTCGG CCTCTGGCCA ACACAGTCCC 001600 001601 ACCCATCTGT GGGTAACAAG GGGGAGTGGG TGTTCTTTTC AGCCTTGCTA AACTCTCTGA ATcaaggatc acaaactaca 001680 001681 gcctgcaggc caaatccagc ccacagcctg tgtttgtaaa taaagcttta ttggaagaaa gccacacccc ttaatctaca 001760 001761 gatgatctgt ggctactttc acaccacaac agagtaccat ggttctgaca gagactgggg gacccagtct aaatgacttc 001840 001841 tgacctggac ctttactgaa aaTCCTCCCA ATCATTCTGT TGACAAGAAT GATGTATTAC TTTTTGCAAT AAGAAACAAG 001920 001921 TAACCTTTGC AGAATTCCAC CCATCTTTCA AGGCTGGTCC CAGAAGTTCC CTTAGCCCAT GCACCTACCT GATCCTGATC 002000 002001 ACTTCCTAAA CTGCAGCCTG GCCCACCTGG ATCCAGCATC ATTTGTGGCG TGTCAGCTCC ATAAATCCAG AGGGCAGGTG 002080 002081 GCGTTGTGTC CTAACTTTCC CGAGCCTACT GTACTGAAAC AGGACAGCAG AGTAGGCCAG CCTCTGTGAC TTCTGCTCCC 002160 002161 TCCCTAGCTT TTCCACCAGA CCCCCCATGG TCCCACCCTG GCTGTGGGAA GCAGGGATCA GGGAGTGTGG CTCGGTGCCA 002240 002241 GTCTCCAGAA CCCTGCCCAC CCTGGCGTGG TGGCAGACAT GGCTACCTGC AGCTGAGCTG CCAGTTCCTC TGAGTCCTCA 002320 002321 AAGACCAGGC CATTTTCTTC ATGTTTCACC AGCTCATGTA AACTGCAG |
Predicted Small Protein
Name | NONHSAT090523_smProtein_884:1099 |
Length | 72 |
Molecular weight | 8093.0569 |
Aromaticity | 0.0845070422535 |
Instability index | 58.8676056338 |
Isoelectric point | 11.9127807617 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0481765187648 |
Amino acid sequence | MRSTAEVTGKSENSNTLTGARGMKNKRQEAFQRLQRRNQGQPQLPGSFTRWHHCRHFSFW PLGGAARKGLP |
Secondary structure | LLLEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLEELLLLLEEEEEE LLLLHHHLLLL |
PRMN | - |
PiMo | - |