NONHSAT090607
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090607 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2879 nt |
Genomic location |
chr3+:81072572..81075472 |
Exon number |
2 |
Exons |
81072572..81074606,81074629..81075472 |
Genome context |
|
Sequence |
000001 aaaaaaaaaa aaGTCAGTCT TTCATTTTAG TGTAAAAGTA CATCTAAGGA ACAGTGAAAC TTTGTAAACT GTTTACATCT 000080
000081 TACACGTTTC CTTGTTGGGA AATGTCAAGG TAGAGTTAAG ATATTTAAGA TCGAGTGAGA AAGTACAAAG ATGAATGAGG 000160 000161 ATATCATATA ATGTAATGAC AGCAGACTTC AGCCTCACCA GCATTCACTT TTGTGTTAAC ATTCTTAGGA TTTCAACAGA 000240 000241 GCCTCTTATT GTCATGTGGT GCATGATGCT CACTCATAGG TACCAACTGA AAATAGTTAT TTTTCAAATC CTATATGTGT 000320 000321 AAGCTTGTGA GGCTTCAGAT TTTTTTTCAT GTTGTTCTAA AATCTTGGCA ACAGTGAAAA ATGTTCAAAA CTCTCCAATA 000400 000401 AAGTGACTGA TAGCAACTTC TATGCCAAAT TTTAGTCATA AAAATGCTCT ATTTGATATA GCGTACACAT CATTAGACAA 000480 000481 GAACCTACAG GTTTTATATT ATACGGCTGG GAGCAAAGGA ATAGCAATGG ATGGTTAAGG AGAAGTACAA AAAAAAAAAG 000560 000561 TGTCTCCTCA GCCTAATTTT TTCCTCCATA TCCTGCACAG GAAACAGAAA TTTCCACCAT TTGTATTATT CCCTAAGATT 000640 000641 AAGATGGTGA CTTCACAGGA AATTTCTAAA AGGGTAACCC ATGAATCCTC CTGAATTTTT TTTCTCAGAT AATACACCCC 000720 000721 TGAAAGCTAT ATTTTAATGC TGACTGTAAG GTGGGGCACA GAAAGCCTAA GACATGAAAG GAATGTTAGA TGTCTGAGAG 000800 000801 AAGAGAGCAG GTGGGGTTGT TTATAGACAG TCTGGCCATC TAAGAGGGAG TGAAAAATAA AGAGCAAATA GAGGATGAAA 000880 000881 GCAGGGGCAC TTATTTATAA AGTCATAGCA ATTTGGGATA GCATTTTCCT ATCACAGTTA TCTGAAACTT TTTTTCCTAT 000960 000961 CACAGATTTG TTACAGATTG CAGATAAGTT GTTTATAAAT CCAAAATCAT GCATAGGTAA TCTATTTGaa taagaaattt 001040 001041 atcagatttg gtagaaagaa ggcaaacata taaacataaa ttagctatgt atattttagg aaaaaatagt aaagttgtaa 001120 001121 aattatatat tatactaaat cccccagaaa atgtcgaata caaaataaca attctaatgc ccccaaaata cgtgaactct 001200 001201 acacaaataa aagcattatt aaagaaattt gaacgtacct aaataaattg aagaaaAGTC ATTTTTGTCA GCTTCACTCC 001280 001281 CTATGCAACC GCTTTTCTTT AACTTTTTAA TGCACATTAA TTCTTAAAAT GACGTCACTT cccgcaactc cttcttagag 001360 001361 gatggccctc aggctgccag agctcaatgt aaatgggtat aaggagaacc acagtgtgtg aaatcaaatc cattgggcag 001440 001441 ctcctcccaa aggctgattg gatcgggcat aaaaatactc cagttatctt tgactcatta tctctgatgt gtcttccata 001520 001521 cactccagag ctttcctatg agattgagcc aaaTAAGTTT CATGGGAATT CCAAGGAAAT TTACTTGATA CCGACTTTTT 001600 001601 GTTTGAATTC CTTCTAATAA ACGAGGACTT Agtaacaaaa gcttaaagag attaatggaa ttacatcaga ctaaaagctt 001680 001681 ctgcccagcc aaagaaacaa tcaacaacaa aataaagaaa tagcctatgg aataggagaa aatattagca aaatttttat 001760 001761 cttctaaggg gttcacaccc aaaatatata aggtactcca acaactcaat agaaagaaaa caaagaactt gaaagtagtc 001840 001841 aaagaatctg aacagatatt tctcaacaaa agacattcaa atggccaaaa ggtatatgaa aaaatgctca atagcactaa 001920 001921 ttttcaggta aatgcaaatt aaaaccacag tttatcacat caccacctgt tagaatagct attatcaaat ataaaaaaga 002000 002001 taaatgttgg tgagaaaaag gaaacccttg tgcattacag tcattatgaa aaacagtatg gaggttcttt catgaaatta 002080 002081 aaaatagaat aatcttatga tctagcaatt ccattactaa gtacatatcc aaaggaaatg aagtcagtat gaaaaacata 002160 002161 tctacatacc atttttattg cagcactatt cacaatagcc aatatataga tgcaacttac gtgtccatgc atggatgaac 002240 002241 ggataaagca aacgtggtat atatacgtaa tgaaaaacta tttcaccttt aaaaataagg aaatcttatc atttttgatg 002320 002321 ataaggatga acctggagta cattacgtta agtgaaataa gccaggcaca ggaagacaac tactgcatta cctttgaatg 002400 002401 tggcatctaa gagttgaact caactaattg tatgtggaat ctaagagctg aactcataga agcagagtag aattgtagtt 002480 002481 tccagggcct ggaaagacag gaggtgttgg ggagatgttg gcccaaggat atgcaatttc agttagataa agaggagtaa 002560 002561 gttcaagaga tgtattgtac gatatggtga ctgtgtcaat gacaatgtat tcttgaaaat tgctaagaaa gtagatttta 002640 002641 gttacatacg tatacatgtg ccatgctggt gtgctgcacc cactaactcg tcatctagca ttaggtatat ctcccattgc 002720 002721 tatccccccc tcTGCttgtg cacatgtacc ctaaaactta aagtataata ataaaaataa ataaattaat taattaatta 002800 002801 attaattaaA TTCATCAAAC CGTAAAAAAA AAAAAAAAAG AAAGTAGATT TTAAggctgg gcacggtggc tcatgcctg |
Predicted Small Protein
Name | NONHSAT090607_smProtein_530:649 |
Length | 40 |
Molecular weight | 4792.6964 |
Aromaticity | 0.153846153846 |
Instability index | 58.2846153846 |
Isoelectric point | 10.1172485352 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0277483365719 |
Amino acid sequence | MVKEKYKKKKCLLSLIFSSISCTGNRNFHHLYYSLRLRW |
Secondary structure | LLHHHHHHHHHHHHHHHEEEELLLLLLEEEEEEEEEELL |
PRMN | - |
PiMo | - |