NONHSAT090607

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT090607

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2879 nt

Genomic location

chr3+:81072572..81075472

Exon number

2

Exons

81072572..81074606,81074629..81075472

Genome context

Sequence
000001 aaaaaaaaaa aaGTCAGTCT TTCATTTTAG TGTAAAAGTA CATCTAAGGA ACAGTGAAAC TTTGTAAACT GTTTACATCT 000080
000081 TACACGTTTC CTTGTTGGGA AATGTCAAGG TAGAGTTAAG ATATTTAAGA TCGAGTGAGA AAGTACAAAG ATGAATGAGG 000160
000161 ATATCATATA ATGTAATGAC AGCAGACTTC AGCCTCACCA GCATTCACTT TTGTGTTAAC ATTCTTAGGA TTTCAACAGA 000240
000241 GCCTCTTATT GTCATGTGGT GCATGATGCT CACTCATAGG TACCAACTGA AAATAGTTAT TTTTCAAATC CTATATGTGT 000320
000321 AAGCTTGTGA GGCTTCAGAT TTTTTTTCAT GTTGTTCTAA AATCTTGGCA ACAGTGAAAA ATGTTCAAAA CTCTCCAATA 000400
000401 AAGTGACTGA TAGCAACTTC TATGCCAAAT TTTAGTCATA AAAATGCTCT ATTTGATATA GCGTACACAT CATTAGACAA 000480
000481 GAACCTACAG GTTTTATATT ATACGGCTGG GAGCAAAGGA ATAGCAATGG ATGGTTAAGG AGAAGTACAA AAAAAAAAAG 000560
000561 TGTCTCCTCA GCCTAATTTT TTCCTCCATA TCCTGCACAG GAAACAGAAA TTTCCACCAT TTGTATTATT CCCTAAGATT 000640
000641 AAGATGGTGA CTTCACAGGA AATTTCTAAA AGGGTAACCC ATGAATCCTC CTGAATTTTT TTTCTCAGAT AATACACCCC 000720
000721 TGAAAGCTAT ATTTTAATGC TGACTGTAAG GTGGGGCACA GAAAGCCTAA GACATGAAAG GAATGTTAGA TGTCTGAGAG 000800
000801 AAGAGAGCAG GTGGGGTTGT TTATAGACAG TCTGGCCATC TAAGAGGGAG TGAAAAATAA AGAGCAAATA GAGGATGAAA 000880
000881 GCAGGGGCAC TTATTTATAA AGTCATAGCA ATTTGGGATA GCATTTTCCT ATCACAGTTA TCTGAAACTT TTTTTCCTAT 000960
000961 CACAGATTTG TTACAGATTG CAGATAAGTT GTTTATAAAT CCAAAATCAT GCATAGGTAA TCTATTTGaa taagaaattt 001040
001041 atcagatttg gtagaaagaa ggcaaacata taaacataaa ttagctatgt atattttagg aaaaaatagt aaagttgtaa 001120
001121 aattatatat tatactaaat cccccagaaa atgtcgaata caaaataaca attctaatgc ccccaaaata cgtgaactct 001200
001201 acacaaataa aagcattatt aaagaaattt gaacgtacct aaataaattg aagaaaAGTC ATTTTTGTCA GCTTCACTCC 001280
001281 CTATGCAACC GCTTTTCTTT AACTTTTTAA TGCACATTAA TTCTTAAAAT GACGTCACTT cccgcaactc cttcttagag 001360
001361 gatggccctc aggctgccag agctcaatgt aaatgggtat aaggagaacc acagtgtgtg aaatcaaatc cattgggcag 001440
001441 ctcctcccaa aggctgattg gatcgggcat aaaaatactc cagttatctt tgactcatta tctctgatgt gtcttccata 001520
001521 cactccagag ctttcctatg agattgagcc aaaTAAGTTT CATGGGAATT CCAAGGAAAT TTACTTGATA CCGACTTTTT 001600
001601 GTTTGAATTC CTTCTAATAA ACGAGGACTT Agtaacaaaa gcttaaagag attaatggaa ttacatcaga ctaaaagctt 001680
001681 ctgcccagcc aaagaaacaa tcaacaacaa aataaagaaa tagcctatgg aataggagaa aatattagca aaatttttat 001760
001761 cttctaaggg gttcacaccc aaaatatata aggtactcca acaactcaat agaaagaaaa caaagaactt gaaagtagtc 001840
001841 aaagaatctg aacagatatt tctcaacaaa agacattcaa atggccaaaa ggtatatgaa aaaatgctca atagcactaa 001920
001921 ttttcaggta aatgcaaatt aaaaccacag tttatcacat caccacctgt tagaatagct attatcaaat ataaaaaaga 002000
002001 taaatgttgg tgagaaaaag gaaacccttg tgcattacag tcattatgaa aaacagtatg gaggttcttt catgaaatta 002080
002081 aaaatagaat aatcttatga tctagcaatt ccattactaa gtacatatcc aaaggaaatg aagtcagtat gaaaaacata 002160
002161 tctacatacc atttttattg cagcactatt cacaatagcc aatatataga tgcaacttac gtgtccatgc atggatgaac 002240
002241 ggataaagca aacgtggtat atatacgtaa tgaaaaacta tttcaccttt aaaaataagg aaatcttatc atttttgatg 002320
002321 ataaggatga acctggagta cattacgtta agtgaaataa gccaggcaca ggaagacaac tactgcatta cctttgaatg 002400
002401 tggcatctaa gagttgaact caactaattg tatgtggaat ctaagagctg aactcataga agcagagtag aattgtagtt 002480
002481 tccagggcct ggaaagacag gaggtgttgg ggagatgttg gcccaaggat atgcaatttc agttagataa agaggagtaa 002560
002561 gttcaagaga tgtattgtac gatatggtga ctgtgtcaat gacaatgtat tcttgaaaat tgctaagaaa gtagatttta 002640
002641 gttacatacg tatacatgtg ccatgctggt gtgctgcacc cactaactcg tcatctagca ttaggtatat ctcccattgc 002720
002721 tatccccccc tcTGCttgtg cacatgtacc ctaaaactta aagtataata ataaaaataa ataaattaat taattaatta 002800
002801 attaattaaA TTCATCAAAC CGTAAAAAAA AAAAAAAAAG AAAGTAGATT TTAAggctgg gcacggtggc tcatgcctg
[back to top]

Predicted Small Protein

Name NONHSAT090607_smProtein_530:649
Length 40
Molecular weight 4792.6964
Aromaticity 0.153846153846
Instability index 58.2846153846
Isoelectric point 10.1172485352
Runs 6
Runs residual 0.0148944193062
Runs probability 0.0277483365719
Amino acid sequence MVKEKYKKKKCLLSLIFSSISCTGNRNFHHLYYSLRLRW
Secondary structure LLHHHHHHHHHHHHHHHEEEELLLLLLEEEEEEEEEELL
PRMN -
PiMo -