NONHSAT090630
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090630 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1395 nt |
Genomic location |
chr3+:83267285..83322491 |
Exon number |
4 |
Exons |
83267285..83267522,83280670..83280725,83281363..83282224,83322253..83322491 |
Genome context |
|
Sequence |
000001 gagcgagggc tgtgaggact gccagcacgc tgacacctct caccgccatt tgccaggtcc agagttcttg tcctacatcc 000080
000081 aggaagaatg aagtacgtgg acaactggaa agtgagtaag gcagagagaa gcttcactga gtaacagaac agctatcagg 000160 000161 agacctgcag tgggtagccc ctttccatag gcaggtcggc ccaacaagtc aggaagacct gaagtgggta gcttcttcGA 000240 000241 CTGATTCCTT ATCCAACATC ACTTTCTGGA CTACCTAGAA TCCAACTATC ATGTGCTTTC ACCAAGATGT CATCTTGTGG 000320 000321 GCTAGTCCGT TGGACCTACT TGACCAATCA GACACTATCC TAATCTCCAT AATGTGATAC CTCCTGAGAG GCAGCCATTT 000400 000401 GACACAGACA CTTTTCTCAG TTTGCTCAGG CTCCAACGCC ATGATCTGCT ATGCAACTCT CTCCACAGTC TCCATCATGG 000480 000481 ATACCTGCCT TTTATTCCAA CACCTAATGT TTTAGTATTA AATCATTCCA TATGATAAGA GTAGAGAGGT GAAAGAGGAA 000560 000561 GACTCATTCA ACGGAAGttg atctgctgtg ttttcacaat tattccatac ataacatttt ctaatatctt tgttacttct 000640 000641 ttttttgact cagttacata gaaatatttt tcttaatttc caaatatatg agtatattcc ttataatttt gctattgatc 000720 000721 tttaatctca ttccattgat tttaaagatt gttctcttta agactgcaat acattgaatt tgttaggcct ttctattgcc 000800 000801 tatcatatgg tcacatttgg tgaattttca atgtgctctt gagggaaaaa aaaagtgtat tctagagttg attcgtttaa 000880 000881 tgcagtataa ataatattat gttatgttat tttaattttt ctgaatactt agtgattttt aaaaaaccat ccataccgat 000960 000961 ttccaagaag gagtattaaa acctccacta gtaattgtgg atgtgcctat atctgttttt agttgtctcc aattttgaat 001040 001041 tttttatctt tagtatggaa aaataagcat ttttatttct tgtaaaaatt aattatttat tataaaatat ccgtttttat 001120 001121 taatggcaaa tatctttgtc ttgatgccta ctttatTATG TAGCTCTGAT GAAATTGCCA ATAAAAGGAC CAAGCTTCAC 001200 001201 TGATCACAAG AAGTAATATG GAATCCATAC TATCATATTC CCATTTTCTG AAAACTTAAC CATGAGTTGG GGCTTCAAGG 001280 001281 ACAGGAGGCT TCTGACATTG GGTTATCTGA TGGCACAACA CCAAAGAGAC ATTCTACACT GGTTTGAACT GAGAGCAATG 001360 001361 GACCTGAGAC CATTCTTGAA ACCAGGTATA CTGGG |
Predicted Small Protein
Name | NONHSAT090630_smProtein_290:376 |
Length | 29 |
Molecular weight | 3218.7595 |
Aromaticity | 0.0714285714286 |
Instability index | 59.3857142857 |
Isoelectric point | 3.76715087891 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0424306659601 |
Amino acid sequence | MCFHQDVILWASPLDLLDQSDTILISIM |
Secondary structure | LLLLLLEEEELLLLHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |