NONHSAT090664
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT090664 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3171 nt |
Genomic location |
chr3+:86119660..86122806 |
Exon number |
1 |
Exons |
86119660..86122806 |
Genome context |
|
Sequence |
000001 AGCGTGTGAA AATGCAAAAC CTCATGTCTT ACCACAACTT TCCCATGGTA TTGCTAATTA CTTAGAGTCT CTAAAATTGC 000080
000081 CCAATATTAT TTCCCTTTGC AAATGGTAAT TTCTGATAAA ACAATACAAA ACAAAAAAAA AGCAGTAATC ACAGCCAAAT 000160 000161 AAATGAAACA CCTAATGAGA ATTACTGTTG AGTAATGCTT TTTATTAAGT GGCACAAAGT ACACACTAAA AACTATGCAA 000240 000241 AATATAGGTA ACTACAGTGT ACGTACATGT AAGTATCTTG TACTTGCTGT GTATGGATGT TGGAAACCCA TGTAATTATA 000320 000321 ATATGCATTT TGAATATTGG GAAAGAGGAA ATCTTAGTGT AGATAATAGA ATTTGTTTTG AAATATACAC TGGCAATATT 000400 000401 GAAATATACT CAGTGCAATA TCTGCAGTTC TATTGCTGGA TACTTAATGC AAAGGGATTT TAAAGAATTC TTCAGCAAGA 000480 000481 TCCAAGAGGT TGCTAATCTT CACCTCTCAC ATACTAAAGC ATTCATTAAA AATACAACTA ATTCAAGGAC AAGTTAAGTT 000560 000561 TTTCTTATTA ATGTGACACA GTAACATTTT TATTTGGATT AGTTTTTGGT GTTATTGCAG AGAAAGAAAT AACCTGAGTT 000640 000641 TTAAATTTCG ATTCATATCT CATTGAATTG GGAATTCTTC AATTTTGTTT GAAATGTGTG CATGTTTTCA TAGATTGTAG 000720 000721 CAAGTACAAA TGTATTCAAT GAAAGAACAT AGGGTAGTTT TAATAGTTAA AGTCACTATA TCTTAATGGG AATTTTAAAA 000800 000801 TATCTTTTCT TTTTCTATTC ATTTTTTCCC TTTCTCTCTC TATTCTACCC CCAAACAAGC CCTTTGCACT CATACCCTTC 000880 000881 CAAAGGCAAT GGATTGAAAG TAGCAAGATA ATAAAGAGAG TTAAAGGGGA CAACATATAA CAATGGGTTC TAAAATCATC 000960 000961 AGCATTTTTA TGTATTGAGA TTATTAATAT TGAATGCAAT AGTTATTGGA TATAGCTGGT AAGTTCTCTG CCATGCATAC 001040 001041 TTACAATAAT CCTTCTACCT CTCACTTTTA ACATGGGCTA TGATACTTCA ATATAAATAG AGGAAATAAT TATTTACCAG 001120 001121 ATATCCCAGG AAGCATTCTT ATGGAACTAT TATAACAGTG CACTCCCCAC CCCCTGGGAA ATCTCAAAAG CCAAGTTCTT 001200 001201 CAGTGTATTC TATGGTGTAT GAATCTGCAT TTGTTTTTCC TTTTCTATCA TTAGCTTTTC CTAAAGGCAA AATATTATAA 001280 001281 CTTTATAAGA ATAGTCCTTC TCCTGCCTAT TTAATATTTC AATGTTAATA TAATTGTATT GGTTTTTAAA AATAATTAAA 001360 001361 ATGGCAACAC TTTGCGATCC AATCTGATAT TTAATTTTTA AAATGTAACA ATTTCTTATA AATTCATGCT GTGTTTTAAG 001440 001441 TAAAAATCAT GTATATGAAT TATTTTACCA AGTAGTATTA TCTGCACGAG ACAAATTTAA GTATTTTAAA AATCATCCTT 001520 001521 ATTAATAAAT AATCCTCATA TAATGCACAG TATTGCCACA AATGCCCACT TCATTTTGTC TGCATAGACA TATTAAGAAT 001600 001601 TTTTCAATGA TGTAATTTAA TTATCCTAAA AGAAATGACA GATTCTTCTG TAGGAAAAAA TAAAAACATG AATATCTCAA 001680 001681 ATTATAATGG TTAATCTCTA AAATATGCTT AAAGTAAGAT GTTTCTATGT TATGTGGTTA TGTTATCAAT AATATTTGGT 001760 001761 TGATCTTCAC ATATTTTATA TGCATATATA TATCAAGAAG TTATATATAT ATAACTCAAG AAACTCAAGT TATATATATA 001840 001841 TGTCAAGAAA TGTATGATTA TTTTGGAGAG AATGGGCCCA AATGTGAAAA AGATATAAAA AAAACAAAAA AAACAAAAAA 001920 001921 AAAACACTAT TTTCCCCTAC GAAATATACT GTATATTTCA AAAGAAGAAA AGTTAAAAGA TATTTGAAGA TTGCAGGGGC 002000 002001 AAAACAAAAA CCTACCAGGG CTCAGCACTT AAGCACTTTT CCCACATCCA GGGTCAAAGC AGCAGTAACT ACATGGACTT 002080 002081 TTAAGTGCGG TATGAAATGC AACATTACGC TTACAAACAG TACTGTCAAA CCTCAAATGC TTTCTTTCTT CAGATGCTTT 002160 002161 TTCGTGTACA TGATACTAGT AGACACTTTT CTCTTTATAT TTACTGATAG TGAAAATCAT ACGCAATAAA ATATTGATGT 002240 002241 TTGAAGGCAG TGGTCACCAA TTGGTTAAAA AACTATGAAA TGTAAACTGA ATTGTTATAT CTCTATCCTT TTTGCTTTTC 002320 002321 TCTGTGTTTT TAATGTATGG AATAAATCTC ATAAATAGAA AGAAAAATAA TCTAGAAATT TTTCAAAGCT AGTACTCTTT 002400 002401 CTCCTTATAA ATGTACACAA TTTTAATCTT TTTACAAATT TATTTAACTG TACCTACTGT ACTTATTGTA GATTCAATGA 002480 002481 CGCAGTTAAG TCATCACCCA AGGATTTATG AATTTGAGAT TACTGACCTG TTTTCTTCAT ATTGCATTCA CATCAATATT 002560 002561 TGTGAATTTG TTGTTCAGCT TTTCATTCAA ACAAAAAATA TTCCCTCAAG AAAGCTCCAT TTTTATCATA AACATTTCAA 002640 002641 CATAACCAAC ATTAGAACAA GTCTGCCATG TTAAAAATAA TTTAAAGACT TATCTCTGAA AACGGTATCC AGAAACGCAG 002720 002721 GTGTTCCCAG TAATGTAGCT TCAAAAATAA AATGTGCTAT TTATATGACA TGAAATTCAT AACTTTTGGA AGGGTATATT 002800 002801 TATGACAGCA TAAAAAATAA ATTCTGTGCT ATAAAGAAGA TCCAACAAAT TAACCATATA AGCACAGAAA ATAGAGAAAC 002880 002881 ACAGTTATTG AATCTACTCT TGTCATTAAC ATTTTCAAAA AACAAAATGC ATATTGTAAT ATTTGGTACA TGACACTTGC 002960 002961 ATGTTGATAT GCCTATATAC TTACAAAGTA TTCAATGTGT ACTTAGCGGC GCTTAAAATA TGTCATGTAC AACTCTTATA 003040 003041 AACATTTTTA CAGGGTTCCC ATTTGCACTT CATCTTTCAG TAAAGTCTTG TCAGAAAAAA ATTGTCTGAT AAATATGGAA 003120 003121 AAATAAAATT TGAATTTTAG TTATCTGTTG GACACTAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT090664_smProtein_2507:2644 |
Length | 46 |
Molecular weight | 5271.2428 |
Aromaticity | 0.177777777778 |
Instability index | 55.0133333333 |
Isoelectric point | 9.30401611328 |
Runs | 5 |
Runs residual | 0.0511363636364 |
Runs probability | 0.0259318141671 |
Amino acid sequence | MNLRLLTCFLHIAFTSIFVNLLFSFSFKQKIFPQESSIFIINIST |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEEEEELL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooo |