NONHSAT090702

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT090702

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5662 nt

Genomic location

chr3+:88210584..88216245

Exon number

1

Exons

88210584..88216245

Genome context

Sequence
000001 gctcactaca acctctgtct cccgggttca agtgattctt ctgcctcagg ctcccgagta gctgggtcta caggtgcgtg 000080
000081 ccgccatgcc tggctaattt tttttgtatt tttaatagag acggggtttc accgtgttag ccaggatggt ctcgatttcc 000160
000161 tgacctcgtg ttctgcccgc cttggcctcc caaatttctg ggattacagg tgtgagccac catgcctggc GCCATATAGA 000240
000241 TTTTATCAAT ACAAAATACA GGATATTTTG ACAGGCCACT TTATTTAGAA TTGGAAACAA AAGTTTCCAA ATTGTTTGAA 000320
000321 TGTGCTAAAT GCTTTTAGCT TTATTTTTCT AGTCTGAACC TTTCCAGTAG CCTTTCAGTA AGATGTAAAT ATTGAAATTA 000400
000401 AATGTAATAT TTACTGTGGT ATATAAAACC AGAAACTCCA GAACTACTTG TGTTAGTCAT GAAATCACTG GCCTAGAGTT 000480
000481 TGGTAGCTTC TAACTTCTAT TGCCAGTACT GCTAAATCtt cttttttttt ctttttcttt tttttttGTG AGTCATTTGG 000560
000561 TGAGGCTCTT GATCAGTAAT TTTCATCTTC AGTTTGTAGA TATCTTAAGT CTCAGGTGTG CAATTAGTTA TACTTGAATT 000640
000641 AATAAATTTA AGGATTGAAG GAAAAATCAC CCACTGCCAG CTGTTACTTG TCTGATTCAG TGTTTTCTGa aaaaaaaaaa 000720
000721 aaaaaaaaaa aaaaaCCAGG AAAGCCTTTT CCTTAAAACA TTTAGTTTAT AAGTTTGCAT CTTTTCCATG TCTCATCTTT 000800
000801 TACTATACTA ATTAGTATCA CACTTAATTC TCAAATTGTT ACATGTAAGT TACCTTTGCC TCCCTAAATT GTAAATTATT 000880
000881 AGAACCGGTG ATTCTTACTT ATTTTGCAGT CTTCTTTTTC CCAGTGCCTT GCACAGGATA AGTCAAATTT Ggggtgctta 000960
000961 ttacatgcca gttactattc catatacatt gcatgtattt actcattcaa tcttgtgagc agctacatga gatagatgcg 001040
001041 attatccctc ttttacctga aaacaggatt gaataacttc ctaggCTATC AAAGTATGCG ATAAATACTG TGACTACACT 001120
001121 ATATTTCCTC ATATGTAGTA GGGTTTTGAG GAATACTTTT TGACTGATTA TCTTCAATGT GAAGGTTTTC ATTTGCTGGC 001200
001201 ATTTATTTCC AAAACAAAGA TTCCTTTAAT CTATATTGCT TGTCTAAATG CAGAGTAGGA GTATTATTTC ATATTGTATT 001280
001281 CTACTTGTAA TTATATCTCG AATTGCTTAT TTAGTGATTT ATAACATCTT GGAGAAAAAT ACAGAATATT CATGTAAAAC 001360
001361 AATATTTCAT AAAGATAATT GGGTAACATA TGTAACAATT TATATCAAAT CTCTTGAACT CACCACAATC TCTAGTCTTT 001440
001441 TTCCCCTCCT GTTTATGACA CCATTGTGCT TTTAGTGTCA GAGACAGTCT TTGTTTCATA TGTTCAATTT CTTGCCACAT 001520
001521 CTGGATGTAG CGTATCTGTA GTGTTTTCTG TTTCTGCTGC TGCTGTTAGG TTCTCTTTAC CTAACCTTTC ACTAATTTTA 001600
001601 ATCTTATTTC TCTGCTTTAA TATTTGTTGC CTATTTATGA CATTAAAATT TTCTTAAAGT ACAACTTTCA TGTGCAGAAC 001680
001681 TTTCAGTGGT GTTGCATTAC CTCCAAAATA AAATCCAGAT TTCATAATCT GCCATTCATC GCCACCTAGT TTGATCCACT 001760
001761 CACTTTCACA CATTGTTTGG TACAATCATC TACTAAGTAG GCTTTCTCTT TATCCTGTAC TTACTTAGAC CTCTGTTTTA 001840
001841 TGCCCACGTA TCCAAACTTA ATTTTTggcc aggcgcagtg gctatctcct ataatcccag cactttggga ggccgaggcg 001920
001921 ggcggatcac aaggtcagga gttcaagacc agcctggcca acatggtgaa accccgtctc tacaaaaaca aaaattaact 002000
002001 gggcgtggtg gcatgttcct gaagtcccag ctactctgta ggctgaggca ggagaattgc ttgaactggc acccaggagg 002080
002081 cagaggttgc agtgagctga gatcgtgcca ttgcactcca gccggggcta cagagtgaga ctcagtctca aaaaaaaaaa 002160
002161 aaaaaatatt tatttttatt ttttattaCA GGCAGTTGGA TAATATATTG TAGAAAGAAA AGAACTATGA TTCAAACAGT 002240
002241 TTAATAATGA AAtttcttca ataaatcaag cattattcct ctgcaggagt tttgtgtaca ttgtctagaa taatctttcc 002320
002321 caagcttttt gcatggctgc ttcattttca cctttgaggc tgcctgcctt ttatcttgga ttaaatgtat tctcttatct 002400
002401 aaattctcag tatttatcag agcaccttgt ttgtttgagt ctagcacttt agatattatt tggtaattta ctaatttatt 002480
002481 atgtatctcc cccagtaaat tttaagctga gaacagggac tgtaactgtt ttactcacat tatatttgta ttgctttgca 002560
002561 cagagactag atattaaata tttattaaag atAGAAATAA GGAAGTGATG CTACTTTGTA TTCAAAGCTT TATATATTCC 002640
002641 TAGACCTTTG CTTATCTGTT AAAAACAAGA cctagcatat aacatatatt agatgctcag taaatatgtt taatgaataa 002720
002721 aACCAAAGTT ATCTTCTGGA ATCATAATAC ATGAGTTCTA ATACACCCTG GTAGATAGAA TTATCTAGTT CTTATACttt 002800
002801 tatttgttgt tgagatggag tttcactctt gttgcccagg ctggagtgca gtgacacgac ctcagctcac tcctgggttc 002880
002881 aagtgattct cctgcctcag cctcccgagt agctgggatt acaggcgccc accacaacgc ccggctaatt ttttgtattt 002960
002961 ttagtagaga tggggtttca acatattggc caggctggtc ttgaactcct gatctcaggt gtttcacccg cctcggcctc 003040
003041 ccaaagtgct gggatcacag gcgtgagcca ccacgcctgt ccTAGTTCTT ATACtttttt tttttttttt tgagaccaag 003120
003121 tcacgctctg tcacccaggc tggagtgcag tagtgtgatc tcggctcact gcaagctctg cctcccaggt ccgcgccatt 003200
003201 ctcctgcctc agccttccga gtagctggga ctacaggcgc ctgccaccat gcccggctaa ttttttctat tttttagtag 003280
003281 agatggggtt tcgccatctt agccaggatg gtctcgatct cctgacctcg tgatctgccc gctcagcttc ccaaagtgct 003360
003361 aggatcacag gcctgagcca ccacgcctgg ccCCTAGTTC TTATACTTTT ATGAAAGACA AAGAAGGTGA AGTGCTCCCC 003440
003441 TGACCCCCCA ACCCCGAAAA AAGCTTAGTA ACATGCTGAA GGTCACATAG TTTTGTTGTG GTGACCTGGC CTGTTTTGTT 003520
003521 TTTAACAGCA AAGCCCATGT GTTTTTCTTG CACTTTGTTT ACCGTCTGAC TACTGCCATT TCCTTAATTT CAAAGATTTT 003600
003601 CAACTTGAAT cctcaatttc ttcacatgaa aaaatggacc atctagatta gatggtttct aaggtcTGCT GTGATTTTAA 003680
003681 AGTTATGTAG CATTGTGGCT GTATGTCTTC ACAGCAGTTC AAGAATATTG CTTTTAAAGG AATTTGTAGT TCTTTGTTGG 003760
003761 GAAAATTTTC TATTATTTTG CTTCCTCATA AGTGATGCTC ATCTTTTCAA AGAAATACAT ATACATTTTT AAGTGTATGT 003840
003841 ATGAGTAGTA TGTGTATTTC TGTCTACAAA ATTATAAAAT GATGAAACTA TTCTGTCATA CCTAGAATAT AAAAGGGAAA 003920
003921 AAAGTGTGAA TTCTTTAAAT ATTTTTCTAT GTCCTAATCA CTGGAAGTCC TATAGTTGTT TCAAACTGTT CTGTAAAATT 004000
004001 TGTCTTGTTG CTTATGTTCA AAATATATTT CCATGTTTTA GTGAAGAAAA GTACAAAGTG GCTTGACAGA AAGTGAAATT 004080
004081 AAGACTGCTG GTAATCCTTT GAAGAGACTT AGTAATAGGA GTTGGCAAAT ATTTAAGAGT GGCATTGGAG ACAAATGGCA 004160
004161 GATTCAGGAT AGGCTGTTTC TGTAGGAAGC ATGGTTCTGG ATGAGTGCTG CTCATAAAGT CATTGAAAGT TATTCCAGAT 004240
004241 AGTTTAATAG AAGTGTTTGT TTAGCAAAGA CAACAGATTT TGCTATTTTG ACTGCATTGA TTGTATTAGT TCAGATTTAT 004320
004321 GAAAGAAAGA GCCCGGAATA CAGAAATAAG ATAACAATAG AAAATTTAAG CATGTCAAGA ACTCTAATGC TGGAATTGTC 004400
004401 ACAGCAACCA CAAAATTACT GGGCATCAAT AGACTCCTAA GAATTAAGAG AAATTGCAGA ATGTAAGCCA TAATTGTCAT 004480
004481 TTTAGGAACA TTATGCTAGA GCACAAGTTT AGGATTGGGC AAAAGAGTTG ATTTTTAAGA TTGCATTGGT GTTCTCTCTC 004560
004561 TCTCtttttt tttttttttt ggagacggat tcttgttccg tcacccaggc tggagtgcag tggcacaagc tcggctcact 004640
004641 gcaacctccg cctcccagga tcaagcgatt ctcctgcctc agcctcctga gtagctggga ttacaggcat gctccaccat 004720
004721 gcccggctaa tttttgtatt tttagtagag acagggtttc accatgttgg ccaggctggt ctcaaactcc tgaccttgtg 004800
004801 atccacccgc cttggcctcc cagagtgctg tgattacagc tgtgagcctc cgtgcccagg ccAGTGTTCT CTCTTAAATG 004880
004881 TGTTTCAATA TGGTGGACAT TTATTGAGCA CTTGTGTTGG GCGTTTCAAC AGGAGGCACT GGTACGAAAA GTAGCTTGTT 004960
004961 CTAGTTCATA TATCATTTGC ACTTTGCTTA ACTTGTATAA GTACTTTTTA CTGTTTAATA AATATTTTAT TAGAAAATAC 005040
005041 TTCTCTGATC TCTCATTGAT GCCCTTCTTA CTATTTTAAC CATTGTCATC TTTGGACATC TGTCTGAATT GTGGGTAAGA 005120
005121 CCTTAACCTT TGGAGTAGAG AGCAATGCTG CTTACAAAAT AATGATTGTT GGTAGTCTGT TCAACAGATT TGCAATTTCA 005200
005201 AAAAGAAAAA AATGCAACTT TTTCCCACAT CTTTCACATA TATTTTGCAA ATCTTATGCA CATAAttcac atattttgca 005280
005281 cattttaaat gtaagatgat ttgcatgaca atccccttaa gtttttaagt gttagtttat tgtagatgct tatgtacaca 005360
005361 gtgaagactg taggtcagtt ttaacctcag ccaacatgag gttaaccgga tgttcacctt actaatgttc tttcgtatta 005440
005441 attttaatgc ttgttaaatt tacattttat atttgatact cattttccca attcacaaaa ttggcttatt gaaaaatgat 005520
005521 gaaaatagta acaaatatca ttcgtaaaaa tgctccaatg gaaataactt cagtgtgaat acagaatgag aaaatgtatg 005600
005601 tgcttttggc cgggcacgtg gctcacacct gtaatcccag cacttgggga ggcctaggtg ag
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Predicted Small Protein

Name NONHSAT090702_smProtein_1247:1474
Length 76
Molecular weight 8834.4918
Aromaticity 0.146666666667
Instability index 44.4906666667
Isoelectric point 8.50299072266
Runs 11
Runs residual 0.0022695035461
Runs probability 0.0508904626551
Amino acid sequence MQSRSIISYCILLVIISRIAYLVIYNILEKNTEYSCKTIFHKDNWVTYVTIYIKSLELTT
ISSLFPLLFMTPLCF
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEEELLLEEEEEEEEEEELEELL
LLLLLHHHHLLLLLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH
HHHHHHHHHLLLLLL
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