NONHSAT090702
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090702 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5662 nt |
Genomic location |
chr3+:88210584..88216245 |
Exon number |
1 |
Exons |
88210584..88216245 |
Genome context |
|
Sequence |
000001 gctcactaca acctctgtct cccgggttca agtgattctt ctgcctcagg ctcccgagta gctgggtcta caggtgcgtg 000080
000081 ccgccatgcc tggctaattt tttttgtatt tttaatagag acggggtttc accgtgttag ccaggatggt ctcgatttcc 000160 000161 tgacctcgtg ttctgcccgc cttggcctcc caaatttctg ggattacagg tgtgagccac catgcctggc GCCATATAGA 000240 000241 TTTTATCAAT ACAAAATACA GGATATTTTG ACAGGCCACT TTATTTAGAA TTGGAAACAA AAGTTTCCAA ATTGTTTGAA 000320 000321 TGTGCTAAAT GCTTTTAGCT TTATTTTTCT AGTCTGAACC TTTCCAGTAG CCTTTCAGTA AGATGTAAAT ATTGAAATTA 000400 000401 AATGTAATAT TTACTGTGGT ATATAAAACC AGAAACTCCA GAACTACTTG TGTTAGTCAT GAAATCACTG GCCTAGAGTT 000480 000481 TGGTAGCTTC TAACTTCTAT TGCCAGTACT GCTAAATCtt cttttttttt ctttttcttt tttttttGTG AGTCATTTGG 000560 000561 TGAGGCTCTT GATCAGTAAT TTTCATCTTC AGTTTGTAGA TATCTTAAGT CTCAGGTGTG CAATTAGTTA TACTTGAATT 000640 000641 AATAAATTTA AGGATTGAAG GAAAAATCAC CCACTGCCAG CTGTTACTTG TCTGATTCAG TGTTTTCTGa aaaaaaaaaa 000720 000721 aaaaaaaaaa aaaaaCCAGG AAAGCCTTTT CCTTAAAACA TTTAGTTTAT AAGTTTGCAT CTTTTCCATG TCTCATCTTT 000800 000801 TACTATACTA ATTAGTATCA CACTTAATTC TCAAATTGTT ACATGTAAGT TACCTTTGCC TCCCTAAATT GTAAATTATT 000880 000881 AGAACCGGTG ATTCTTACTT ATTTTGCAGT CTTCTTTTTC CCAGTGCCTT GCACAGGATA AGTCAAATTT Ggggtgctta 000960 000961 ttacatgcca gttactattc catatacatt gcatgtattt actcattcaa tcttgtgagc agctacatga gatagatgcg 001040 001041 attatccctc ttttacctga aaacaggatt gaataacttc ctaggCTATC AAAGTATGCG ATAAATACTG TGACTACACT 001120 001121 ATATTTCCTC ATATGTAGTA GGGTTTTGAG GAATACTTTT TGACTGATTA TCTTCAATGT GAAGGTTTTC ATTTGCTGGC 001200 001201 ATTTATTTCC AAAACAAAGA TTCCTTTAAT CTATATTGCT TGTCTAAATG CAGAGTAGGA GTATTATTTC ATATTGTATT 001280 001281 CTACTTGTAA TTATATCTCG AATTGCTTAT TTAGTGATTT ATAACATCTT GGAGAAAAAT ACAGAATATT CATGTAAAAC 001360 001361 AATATTTCAT AAAGATAATT GGGTAACATA TGTAACAATT TATATCAAAT CTCTTGAACT CACCACAATC TCTAGTCTTT 001440 001441 TTCCCCTCCT GTTTATGACA CCATTGTGCT TTTAGTGTCA GAGACAGTCT TTGTTTCATA TGTTCAATTT CTTGCCACAT 001520 001521 CTGGATGTAG CGTATCTGTA GTGTTTTCTG TTTCTGCTGC TGCTGTTAGG TTCTCTTTAC CTAACCTTTC ACTAATTTTA 001600 001601 ATCTTATTTC TCTGCTTTAA TATTTGTTGC CTATTTATGA CATTAAAATT TTCTTAAAGT ACAACTTTCA TGTGCAGAAC 001680 001681 TTTCAGTGGT GTTGCATTAC CTCCAAAATA AAATCCAGAT TTCATAATCT GCCATTCATC GCCACCTAGT TTGATCCACT 001760 001761 CACTTTCACA CATTGTTTGG TACAATCATC TACTAAGTAG GCTTTCTCTT TATCCTGTAC TTACTTAGAC CTCTGTTTTA 001840 001841 TGCCCACGTA TCCAAACTTA ATTTTTggcc aggcgcagtg gctatctcct ataatcccag cactttggga ggccgaggcg 001920 001921 ggcggatcac aaggtcagga gttcaagacc agcctggcca acatggtgaa accccgtctc tacaaaaaca aaaattaact 002000 002001 gggcgtggtg gcatgttcct gaagtcccag ctactctgta ggctgaggca ggagaattgc ttgaactggc acccaggagg 002080 002081 cagaggttgc agtgagctga gatcgtgcca ttgcactcca gccggggcta cagagtgaga ctcagtctca aaaaaaaaaa 002160 002161 aaaaaatatt tatttttatt ttttattaCA GGCAGTTGGA TAATATATTG TAGAAAGAAA AGAACTATGA TTCAAACAGT 002240 002241 TTAATAATGA AAtttcttca ataaatcaag cattattcct ctgcaggagt tttgtgtaca ttgtctagaa taatctttcc 002320 002321 caagcttttt gcatggctgc ttcattttca cctttgaggc tgcctgcctt ttatcttgga ttaaatgtat tctcttatct 002400 002401 aaattctcag tatttatcag agcaccttgt ttgtttgagt ctagcacttt agatattatt tggtaattta ctaatttatt 002480 002481 atgtatctcc cccagtaaat tttaagctga gaacagggac tgtaactgtt ttactcacat tatatttgta ttgctttgca 002560 002561 cagagactag atattaaata tttattaaag atAGAAATAA GGAAGTGATG CTACTTTGTA TTCAAAGCTT TATATATTCC 002640 002641 TAGACCTTTG CTTATCTGTT AAAAACAAGA cctagcatat aacatatatt agatgctcag taaatatgtt taatgaataa 002720 002721 aACCAAAGTT ATCTTCTGGA ATCATAATAC ATGAGTTCTA ATACACCCTG GTAGATAGAA TTATCTAGTT CTTATACttt 002800 002801 tatttgttgt tgagatggag tttcactctt gttgcccagg ctggagtgca gtgacacgac ctcagctcac tcctgggttc 002880 002881 aagtgattct cctgcctcag cctcccgagt agctgggatt acaggcgccc accacaacgc ccggctaatt ttttgtattt 002960 002961 ttagtagaga tggggtttca acatattggc caggctggtc ttgaactcct gatctcaggt gtttcacccg cctcggcctc 003040 003041 ccaaagtgct gggatcacag gcgtgagcca ccacgcctgt ccTAGTTCTT ATACtttttt tttttttttt tgagaccaag 003120 003121 tcacgctctg tcacccaggc tggagtgcag tagtgtgatc tcggctcact gcaagctctg cctcccaggt ccgcgccatt 003200 003201 ctcctgcctc agccttccga gtagctggga ctacaggcgc ctgccaccat gcccggctaa ttttttctat tttttagtag 003280 003281 agatggggtt tcgccatctt agccaggatg gtctcgatct cctgacctcg tgatctgccc gctcagcttc ccaaagtgct 003360 003361 aggatcacag gcctgagcca ccacgcctgg ccCCTAGTTC TTATACTTTT ATGAAAGACA AAGAAGGTGA AGTGCTCCCC 003440 003441 TGACCCCCCA ACCCCGAAAA AAGCTTAGTA ACATGCTGAA GGTCACATAG TTTTGTTGTG GTGACCTGGC CTGTTTTGTT 003520 003521 TTTAACAGCA AAGCCCATGT GTTTTTCTTG CACTTTGTTT ACCGTCTGAC TACTGCCATT TCCTTAATTT CAAAGATTTT 003600 003601 CAACTTGAAT cctcaatttc ttcacatgaa aaaatggacc atctagatta gatggtttct aaggtcTGCT GTGATTTTAA 003680 003681 AGTTATGTAG CATTGTGGCT GTATGTCTTC ACAGCAGTTC AAGAATATTG CTTTTAAAGG AATTTGTAGT TCTTTGTTGG 003760 003761 GAAAATTTTC TATTATTTTG CTTCCTCATA AGTGATGCTC ATCTTTTCAA AGAAATACAT ATACATTTTT AAGTGTATGT 003840 003841 ATGAGTAGTA TGTGTATTTC TGTCTACAAA ATTATAAAAT GATGAAACTA TTCTGTCATA CCTAGAATAT AAAAGGGAAA 003920 003921 AAAGTGTGAA TTCTTTAAAT ATTTTTCTAT GTCCTAATCA CTGGAAGTCC TATAGTTGTT TCAAACTGTT CTGTAAAATT 004000 004001 TGTCTTGTTG CTTATGTTCA AAATATATTT CCATGTTTTA GTGAAGAAAA GTACAAAGTG GCTTGACAGA AAGTGAAATT 004080 004081 AAGACTGCTG GTAATCCTTT GAAGAGACTT AGTAATAGGA GTTGGCAAAT ATTTAAGAGT GGCATTGGAG ACAAATGGCA 004160 004161 GATTCAGGAT AGGCTGTTTC TGTAGGAAGC ATGGTTCTGG ATGAGTGCTG CTCATAAAGT CATTGAAAGT TATTCCAGAT 004240 004241 AGTTTAATAG AAGTGTTTGT TTAGCAAAGA CAACAGATTT TGCTATTTTG ACTGCATTGA TTGTATTAGT TCAGATTTAT 004320 004321 GAAAGAAAGA GCCCGGAATA CAGAAATAAG ATAACAATAG AAAATTTAAG CATGTCAAGA ACTCTAATGC TGGAATTGTC 004400 004401 ACAGCAACCA CAAAATTACT GGGCATCAAT AGACTCCTAA GAATTAAGAG AAATTGCAGA ATGTAAGCCA TAATTGTCAT 004480 004481 TTTAGGAACA TTATGCTAGA GCACAAGTTT AGGATTGGGC AAAAGAGTTG ATTTTTAAGA TTGCATTGGT GTTCTCTCTC 004560 004561 TCTCtttttt tttttttttt ggagacggat tcttgttccg tcacccaggc tggagtgcag tggcacaagc tcggctcact 004640 004641 gcaacctccg cctcccagga tcaagcgatt ctcctgcctc agcctcctga gtagctggga ttacaggcat gctccaccat 004720 004721 gcccggctaa tttttgtatt tttagtagag acagggtttc accatgttgg ccaggctggt ctcaaactcc tgaccttgtg 004800 004801 atccacccgc cttggcctcc cagagtgctg tgattacagc tgtgagcctc cgtgcccagg ccAGTGTTCT CTCTTAAATG 004880 004881 TGTTTCAATA TGGTGGACAT TTATTGAGCA CTTGTGTTGG GCGTTTCAAC AGGAGGCACT GGTACGAAAA GTAGCTTGTT 004960 004961 CTAGTTCATA TATCATTTGC ACTTTGCTTA ACTTGTATAA GTACTTTTTA CTGTTTAATA AATATTTTAT TAGAAAATAC 005040 005041 TTCTCTGATC TCTCATTGAT GCCCTTCTTA CTATTTTAAC CATTGTCATC TTTGGACATC TGTCTGAATT GTGGGTAAGA 005120 005121 CCTTAACCTT TGGAGTAGAG AGCAATGCTG CTTACAAAAT AATGATTGTT GGTAGTCTGT TCAACAGATT TGCAATTTCA 005200 005201 AAAAGAAAAA AATGCAACTT TTTCCCACAT CTTTCACATA TATTTTGCAA ATCTTATGCA CATAAttcac atattttgca 005280 005281 cattttaaat gtaagatgat ttgcatgaca atccccttaa gtttttaagt gttagtttat tgtagatgct tatgtacaca 005360 005361 gtgaagactg taggtcagtt ttaacctcag ccaacatgag gttaaccgga tgttcacctt actaatgttc tttcgtatta 005440 005441 attttaatgc ttgttaaatt tacattttat atttgatact cattttccca attcacaaaa ttggcttatt gaaaaatgat 005520 005521 gaaaatagta acaaatatca ttcgtaaaaa tgctccaatg gaaataactt cagtgtgaat acagaatgag aaaatgtatg 005600 005601 tgcttttggc cgggcacgtg gctcacacct gtaatcccag cacttgggga ggcctaggtg ag |
Predicted Small Protein
Name | NONHSAT090702_smProtein_1247:1474 |
Length | 76 |
Molecular weight | 8834.4918 |
Aromaticity | 0.146666666667 |
Instability index | 44.4906666667 |
Isoelectric point | 8.50299072266 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0508904626551 |
Amino acid sequence | MQSRSIISYCILLVIISRIAYLVIYNILEKNTEYSCKTIFHKDNWVTYVTIYIKSLELTT ISSLFPLLFMTPLCF |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLEEEELLLEEEEEEEEEEELEELL LLLLLHHHHLLLLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH HHHHHHHHHLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTT TTTTTTTTToooooo |