NONHSAT090862
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090862 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2158 nt |
Genomic location |
chr3+:99898411..99900574 |
Exon number |
2 |
Exons |
99898411..99898445,99898452..99900574 |
Genome context |
|
Sequence |
000001 TCTCACATCC AGGCCACTCT GATGCAAGGA GTGGGGAGGC CTTAGGCAGC TCTGCCCCTG TGGCTCTGCA GGGTACAGTC 000080
000081 CCCATGGTTG CTTTCACAGG CTGGTGTTGA GTGCCTACAG CATATCCAGG TACACAGTGT AAGCTGTCAG TGGATCTACC 000160 000161 ATTCTGGGGT CTGGAGGATG ATGGCTCTCT TCTCACAGCT CCACTAGGCA GTGCCCCAGT GGGGACTCTG TGTAGGGTCT 000240 000241 CCAACCCCAC ATTTCCCCTC TGCACTGCCC TAGTAGAGGC TCTCCATGAG GGCTTCACCC CTGTAGCAGA CTTCTGCCTG 000320 000321 GACATCCAGG CGTTTCCATA CATCCTCTGA AATTGAGGCA GAGGCTCCCA AACCTCAGCT CTTGCCTTCT GCACACCCAT 000400 000401 AAGCCCAACA GCACGTGGAA GCTGCCAAGG CTTGGGGCTT GCACCCTCTG AAGCAATGGT TCAGCTGTAC CTTGGCCCCT 000480 000481 TTTAGTCACA GCTGGAGCTG GGGCAGCTGG GAATTAGGCT GCCATGTCCT AAGGCTGCAC AGAGCAGCTG GGCCCAGGGC 000560 000561 CTAGCCCACG AAACCATTTT TTCCTCCTAG GCCTCTGGGC CTGTTTGGTG GGGCTGGGGA GGGCTGCCAC GAAGGTCTCT 000640 000641 GAAGTGCCCT GGAGGCATTT TATCCATTGT TTTGGCTATT AACATTTGGC TCCTCTTGTG CAAACTTCTG CAGTGAGCTT 000720 000721 GAATTTCTCC CCAGAAAATG GCTTTTCTTT TCTACCACAT GGTCAGGCTG CAAATTTTCA AGCTTTTATA CTCTGCTTTG 000800 000801 CTTTTAAATA TAAGTTATCT CTGCTTATGC AAATGAGCAT AGGCTTTTAG AAGCAACCAG GCCACCTCTT GAACACTTTG 000880 000881 CTGCTTAGAA ATTTCTGCCG GATACCCTAA GTCATCTCTC CCAAGTTCAA AGTTACACAG ATCCCTAAAG CAGGGGCACA 000960 000961 ATGCCACCAG TCTCTGCTAA AGCATAGCAA GAGTGACCTT TGCTCCAGTT CCTGATAAGT TCCTCATCTC CATTTGAGAC 001040 001041 CACCTCAGCC TGGACTTCAT TGTCCATATC ACTATCAGCA TTTTGGTCAA AACTGTTCAA CAAGTCTCTA GGAGGTTCCA 001120 001121 AACATCCCTC ATATTCCTGT CTTCTTCTGA TCCTTCCAAA CTGTTGCAAC TTCTCCCCGT TACCCAGTTT CAAAGTTGCT 001200 001201 TCCACATTTT TTAGGTATCT TTATAGAAAT GTCCCACTTC TCTGGTACCA ATTTTTTGTA TTCTTCCATT TTTACACTGC 001280 001281 TATGAAGAAC TACCTGAGAC TGGGTAGTTT ATAATGAAAA GAGGTTTAAT TGACTTCCAG TTCCACAGAC TGTACAGGAG 001360 001361 GATGGCTGGG GAGGCCTCAG GAAATTTACA ATCATGGCAG AAGATGAAAG GGATGCAACC ACATCTTGTG GCAACAAGAG 001440 001441 AGCAAGAGAG TGAAGGGGGA AGTGCTATAC ACTTTTAAAC AATCAGATCT CTTGAGAACT CACTATCATG AGAACAGCAA 001520 001521 GGGGGAAATC TGCCCCCATG ATCTAATCAC CTCCCACCAG ATCCCTCCCC CAACACTGGG AATTACAATT CGACATGAAA 001600 001601 CTTGGGTGGG GACACAGCCA AACCACATCA GCAGGGTAGT GGTAGAAAGA GCATCAAGTG AATTTGGCCC TTTGTAAACA 001680 001681 TATAAAAAGA CAACAATATA ATTACAGCTG TCTTATTAAC TTTTTTTTAA AAACTTTCTA TTTTGAAACT TCAGGCTTAA 001760 001761 TAGAAAAGTT TAAAAAATAG AGAATTCCCA TATCCCCTTC CCTGAGCTTT CCCTGTGTTA AATTCTTGTA TAACCATAAT 001840 001841 AGAGTTATCA AAACTAAGAA GTCATCACTG GTACTGTATA ATTAACTAAA CTACAGAGTT TATTTGGATT TCTCCAATTT 001920 001921 TTCCACTAAT GTCCTTGTTC TATTCCAGGA TTCACTGCAG GATCCCACAT TGCACTTACT TAGTTGTTGT ATCTTTTTGG 002000 002001 TTTCTTCAGA CCAGTGACAG TTCCTCAGTA TTTCCCTGTC TTTCATGACC TTCACACTTT TGAACAGTAT CCATCGTGTA 002080 002081 TTTTGTAGAA TGTCCTTCAA TTTGGATTTG TCTGTAATGT TCTCATGATT TGATTAAAGT TATGCATTTT TTGACCAG |
Predicted Small Protein
Name | NONHSAT090862_smProtein_1313:1477 |
Length | 55 |
Molecular weight | 6248.0834 |
Aromaticity | 0.0925925925926 |
Instability index | 56.0055555556 |
Isoelectric point | 9.98004150391 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0451895746014 |
Amino acid sequence | MKRGLIDFQFHRLYRRMAGEASGNLQSWQKMKGMQPHLVATREQESEGGSAIHF |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHLLLHHHHHHHHLLLLLEEELLEEELLLLLEELL |
PRMN | - |
PiMo | - |