NONHSAT090866

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT090866

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2304 nt

Genomic location

chr3+:100034707..100044078

Exon number

4

Exons

100034707..100035031,100037913..100038048,100039621..100039815,100042431..100044078

Genome context

Sequence
000001 CATATTTAAG AGCATTCAGC CTACCAAGGC CTTATGCCAC TTTTGCTAAC ATAATTTCTT TATCTTCTTT TAATTTCCTT 000080
000081 AACATAGCTC TCCTAAAACT ATGGGTAGTA CATGGGGTTT TGGGGGGGTC AGGTAAGGAA TAATTACATT TTGTGTGAAT 000160
000161 ATTCAAATGA TGCTTGGTAA AAATCTTTGA TAACTTCTTA AGTGATTATT TCTCTCCTAA AATTCTTTGA ATATAGGCAT 000240
000241 GTGAGCAGCA GTGACAGAGT GGGCAAGCCT TACCGTGGCG TAAAGCCTGT TTTCAGCATT GGGGATGAAG AAGAATACGA 000320
000321 CACAGATGAA ATTGACAGTT CTTCAATGTC AGATGATGAT AGAAAAGAGG TTGTAAACAT TCAGACTTGG ATAAACAAAC 000400
000401 CAGATGTCAA ACATCATTTT CCTTGTAAAG AAGTAAAAGA AAGTGGACAC ATGTTTCCCA GTCATCTGTT GGTTACTGCA 000480
000481 ACACATATGT ACTGTTTAAG GGAGATTGTT TCACGGAAAG GATTGGCTTA TATACAGTCT CGACAAGCGC TGAATTCTGT 000560
000561 AGTTAAAATT ACATCCAAAA AAAAACATCC TGAACTCATT ACCTTCAAGT ATGGAAATAG CAGTGCTTCA GGAATAGAAA 000640
000641 TCTTGGCAAT CGAAAGGTAT TTGATTCCAA ATGCAGGGGA TGCAACTAAA GCCATAAAAC AGCAGATCAT GAAAGTTTTG 000720
000721 GATGCTTTGG AAAGttaata taaaagaaaa ttatataaaa agaaattaaG ACAACCAAGA GAAACATGGA CATATACCTC 000800
000801 CTGACTGAAT ACTAACTGGA GACCTTTCAT TTGCTCATGG GGCTGCTTAA ATAGCAGGTC TAAGAAAGTG TAAATTATTA 000880
000881 TAATCAATCT GTGGACAGTA AACTTTTTAA AAATTTTTCT TCTGCATTTT GGTTTTATAA AATGATGTAT TATAAAGGTC 000960
000961 AGTTATTAAA TTACTTTGAA GTAACTGACC CTGTGCCCTT ATGGACTAAG TAAGGGTACA GAATGCAGTT CTGTTTTGAA 001040
001041 GAGCTGTTTT AAGGGAACAT GCATCACTTT CGGGATCAAA AACAACTGTA CACATACATA TCTGCAGTGT CTTCACTGAA 001120
001121 AATTAGAGAT AGAATTAGTT GAAGAGACTT CCTTAATTGC TACATTGTTT TACTCACTGA GCAATATCAG AAACTAAAAC 001200
001201 ATAGATTAAT AATTCACTCA CTGTTTCTAT TCTTCTTAAA AAGAGTGAAA TCTTTTTAAT GGAATGGTTG AAGATTCCTG 001280
001281 CCAACTCAAA ATACAGTACA GCTAGTAAAA TGTTGAAACA TCAGTTTCTA AATCACCTTT GCTCCATTAG CTAATTTTTT 001360
001361 GGACACTAAA TGCTTCAAAG ATAAGAAACT TCATCCTAAT GATTTCTAAA GAGCAGTTAA AAGCATTAAA ATAAGTAGGT 001440
001441 AGGCTGTTAA GATTAAAATT AACATTTTGG GGACAGAATT GTGTCTGTAA AAATGTCATT GGTTTTATTA CAAGCGGATT 001520
001521 ATTTTATTCA TATTTTAAAA CAAATGTTTA AGCCACATTG ATTTATCCTC ATTGAGGATT ATGGTCTGTG ACCACAGTAA 001600
001601 TATCCACTTA TATAAATGCC AAATAATCAG AGAGCTTATA AAGTACAATT GTTTTTGTCA TCATTTTCTG AATTTCTTTC 001680
001681 TCTTCTTTTG GTTTTGTCCT CTCATTGAAG TTCCAGTGGT TTGAAATTAG TTTTGGACAC ATTGTCTTAA TGTACTGAAA 001760
001761 ATTGCTCTGC TGTATTTTGC AGCGTTCTTC ATTTAATTTA TAATGGTCCA TATTAGACAC ATTTGGTAAG AGAAGTCCAG 001840
001841 GAACACATTT AGGGCCATGG AATAGTATTT TGTAAAATCC ATTTGGGAAG TTGCAATACC CACAATCTGA CATGTCCTAA 001920
001921 AATGTAAGGG ATTATCTCTA AGGGGTTGAT GGGAGAAATA TTTAGATGTA CCCTGTTAAC AGCCAGTCAT TTTGATTTAC 002000
002001 TTATGGAAAT CAAGTGAATA AAAGGCAACA TAATTTGGGA AATTTTATTC TAATATCTAA TAAAAACAGT TTGAGTGGTT 002080
002081 GAAGACATCT GCATGAAATT GCACCTAGGT GCATTACTTG ATATAACTCT CCCCTAAAAC TGTTGTAATT GCATTTTTTC 002160
002161 CCTTTTCTTG GCACCCCTTT AGAAATGTAC TGAAGTCTCA TTTTTCACCC ATTTCAGCCA TGGGACATTT TTCATAATAT 002240
002241 TAATGTAAAG ATGTTTGTGT TACTGTTTAT AAATTACAAT TGTAAATAAA TTACTAGTTT GCCC
[back to top]

Predicted Small Protein

Name NONHSAT090866_smProtein_1580:1723
Length 48
Molecular weight 5821.9463
Aromaticity 0.212765957447
Instability index 45.0106382979
Isoelectric point 6.87030029297
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0452595452595
Amino acid sequence MVCDHSNIHLYKCQIIRELIKYNCFCHHFLNFFLFFWFCPLIEVPVV
Secondary structure LLLLLLLLLHHHHHHHHHHHHHLLLHHHHHHHHHHHHHLLLEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooo