NONHSAT090866
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090866 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2304 nt |
Genomic location |
chr3+:100034707..100044078 |
Exon number |
4 |
Exons |
100034707..100035031,100037913..100038048,100039621..100039815,100042431..100044078 |
Genome context |
|
Sequence |
000001 CATATTTAAG AGCATTCAGC CTACCAAGGC CTTATGCCAC TTTTGCTAAC ATAATTTCTT TATCTTCTTT TAATTTCCTT 000080
000081 AACATAGCTC TCCTAAAACT ATGGGTAGTA CATGGGGTTT TGGGGGGGTC AGGTAAGGAA TAATTACATT TTGTGTGAAT 000160 000161 ATTCAAATGA TGCTTGGTAA AAATCTTTGA TAACTTCTTA AGTGATTATT TCTCTCCTAA AATTCTTTGA ATATAGGCAT 000240 000241 GTGAGCAGCA GTGACAGAGT GGGCAAGCCT TACCGTGGCG TAAAGCCTGT TTTCAGCATT GGGGATGAAG AAGAATACGA 000320 000321 CACAGATGAA ATTGACAGTT CTTCAATGTC AGATGATGAT AGAAAAGAGG TTGTAAACAT TCAGACTTGG ATAAACAAAC 000400 000401 CAGATGTCAA ACATCATTTT CCTTGTAAAG AAGTAAAAGA AAGTGGACAC ATGTTTCCCA GTCATCTGTT GGTTACTGCA 000480 000481 ACACATATGT ACTGTTTAAG GGAGATTGTT TCACGGAAAG GATTGGCTTA TATACAGTCT CGACAAGCGC TGAATTCTGT 000560 000561 AGTTAAAATT ACATCCAAAA AAAAACATCC TGAACTCATT ACCTTCAAGT ATGGAAATAG CAGTGCTTCA GGAATAGAAA 000640 000641 TCTTGGCAAT CGAAAGGTAT TTGATTCCAA ATGCAGGGGA TGCAACTAAA GCCATAAAAC AGCAGATCAT GAAAGTTTTG 000720 000721 GATGCTTTGG AAAGttaata taaaagaaaa ttatataaaa agaaattaaG ACAACCAAGA GAAACATGGA CATATACCTC 000800 000801 CTGACTGAAT ACTAACTGGA GACCTTTCAT TTGCTCATGG GGCTGCTTAA ATAGCAGGTC TAAGAAAGTG TAAATTATTA 000880 000881 TAATCAATCT GTGGACAGTA AACTTTTTAA AAATTTTTCT TCTGCATTTT GGTTTTATAA AATGATGTAT TATAAAGGTC 000960 000961 AGTTATTAAA TTACTTTGAA GTAACTGACC CTGTGCCCTT ATGGACTAAG TAAGGGTACA GAATGCAGTT CTGTTTTGAA 001040 001041 GAGCTGTTTT AAGGGAACAT GCATCACTTT CGGGATCAAA AACAACTGTA CACATACATA TCTGCAGTGT CTTCACTGAA 001120 001121 AATTAGAGAT AGAATTAGTT GAAGAGACTT CCTTAATTGC TACATTGTTT TACTCACTGA GCAATATCAG AAACTAAAAC 001200 001201 ATAGATTAAT AATTCACTCA CTGTTTCTAT TCTTCTTAAA AAGAGTGAAA TCTTTTTAAT GGAATGGTTG AAGATTCCTG 001280 001281 CCAACTCAAA ATACAGTACA GCTAGTAAAA TGTTGAAACA TCAGTTTCTA AATCACCTTT GCTCCATTAG CTAATTTTTT 001360 001361 GGACACTAAA TGCTTCAAAG ATAAGAAACT TCATCCTAAT GATTTCTAAA GAGCAGTTAA AAGCATTAAA ATAAGTAGGT 001440 001441 AGGCTGTTAA GATTAAAATT AACATTTTGG GGACAGAATT GTGTCTGTAA AAATGTCATT GGTTTTATTA CAAGCGGATT 001520 001521 ATTTTATTCA TATTTTAAAA CAAATGTTTA AGCCACATTG ATTTATCCTC ATTGAGGATT ATGGTCTGTG ACCACAGTAA 001600 001601 TATCCACTTA TATAAATGCC AAATAATCAG AGAGCTTATA AAGTACAATT GTTTTTGTCA TCATTTTCTG AATTTCTTTC 001680 001681 TCTTCTTTTG GTTTTGTCCT CTCATTGAAG TTCCAGTGGT TTGAAATTAG TTTTGGACAC ATTGTCTTAA TGTACTGAAA 001760 001761 ATTGCTCTGC TGTATTTTGC AGCGTTCTTC ATTTAATTTA TAATGGTCCA TATTAGACAC ATTTGGTAAG AGAAGTCCAG 001840 001841 GAACACATTT AGGGCCATGG AATAGTATTT TGTAAAATCC ATTTGGGAAG TTGCAATACC CACAATCTGA CATGTCCTAA 001920 001921 AATGTAAGGG ATTATCTCTA AGGGGTTGAT GGGAGAAATA TTTAGATGTA CCCTGTTAAC AGCCAGTCAT TTTGATTTAC 002000 002001 TTATGGAAAT CAAGTGAATA AAAGGCAACA TAATTTGGGA AATTTTATTC TAATATCTAA TAAAAACAGT TTGAGTGGTT 002080 002081 GAAGACATCT GCATGAAATT GCACCTAGGT GCATTACTTG ATATAACTCT CCCCTAAAAC TGTTGTAATT GCATTTTTTC 002160 002161 CCTTTTCTTG GCACCCCTTT AGAAATGTAC TGAAGTCTCA TTTTTCACCC ATTTCAGCCA TGGGACATTT TTCATAATAT 002240 002241 TAATGTAAAG ATGTTTGTGT TACTGTTTAT AAATTACAAT TGTAAATAAA TTACTAGTTT GCCC |
Predicted Small Protein
Name | NONHSAT090866_smProtein_1580:1723 |
Length | 48 |
Molecular weight | 5821.9463 |
Aromaticity | 0.212765957447 |
Instability index | 45.0106382979 |
Isoelectric point | 6.87030029297 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0452595452595 |
Amino acid sequence | MVCDHSNIHLYKCQIIRELIKYNCFCHHFLNFFLFFWFCPLIEVPVV |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHLLLHHHHHHHHHHHHHLLLEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooo |