NONHSAT091269

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091269

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1624 nt

Genomic location

chr3-:113950245..113951868

Exon number

1

Exons

113950245..113951868

Genome context

Sequence
000001 ATGTGCCACA TGCAGGCAGA GCTGTCTCCA TCCTCAGAGC CAGAGGCTGG CCCTTCACAG CCTCCAGTCA GGCAGGGGGC 000080
000081 CCTCCGGGGT GGCCTGCTCA TGGACTACAG CCCAGCAAGT GGGGGGGGGG CAGGGGGCAG TGACATCCCC CAGGCTCTAC 000160
000161 CAGGTATTTA TCTTTTCCCC TCCAGCTGGT GCCTCTGAGC TTCACAGGGC CCAGAAGCGA CCAGCCCCAC CCACTAAGGG 000240
000241 TCCTCAGGAG CTGGAGAGGG GCCCTGGGCT GGGGGCCAGA GAGGGACTAC CCCCTGAAGA ACCATCTTCT GTAGGGCTAT 000320
000321 TGGGCCCAGG GGGACTGGGG CTGGGAGTAG GTGTGTCCAG CCACCATTTC TCCCACCGTG GCCTCTGTGT TGTGGAACAG 000400
000401 GGAAGTAGTG CCACCTCTTC TTGGACTTCA GGGGCCTGGA GTCCCTCCTG GCCCCGATCA TATGCTTCCT GAAATACTTT 000480
000481 ACACACCAGA GACTAGGCTT TCCCAGACCC AGGGGGACAG GGGTCCCTAG GGGAGTCCCC AGGGCCAGCC CTCTGGGCCA 000560
000561 GCTACACACG CTGGACACTG ATTTGCAGTT TTGCACAAAT AAGGGGTAAG AGCCCAGTGG CTAGGGTGGG CAAGAGGGGG 000640
000641 AGCCTCTGGC CTAGGGAGTC CCCTGGCATT GACAGTGGGC ACAGTCCCAA GCACACACCC CCAGCCCTGG ACCTCCAGGC 000720
000721 CCCTGCCCCA CCAAGCAAAG GCTGCTTCTG CTGGAGAAGC CCCAAATGTC AGTTCTAAGG AAGAGGGTCC AGCCCTTTGG 000800
000801 ACGTGCCAGG GAACCCTGGG CCACCCTACT GCTACCAACA GTTCTGATGC TCAAACCACA CCCATCTGGA GCCACCTGCT 000880
000881 GCCTGGGCCC AAGGAGCCTG TTTTGGACCC AACAGACTGC AGTCCCATGG GGCGGAGGCT GACAGGTGCC CATCACCTGA 000960
000961 AGCTGAGCCC ACTTTGAAGC CTCTGGAAGG GGCCAGGCCT GCTGAGCCCC CGTAGTGCCT CCCCTGTTCC TACCCCTGCT 001040
001041 ATCAGCTGTA CCCTGCTGGG CAACTTTGAG GAATCATTGC TGCAAGGACG CTTTGCACCA TCTGGCCACA TTGAGGGCTT 001120
001121 CACAGCAGAG ACTGGAGCTA GTGGGTCCTA CTGCCCCCAC CATGTCACAC TGCCTGTCAC TGTCACCTTC TTTGAGGTTT 001200
001201 CTGAGCAAAA TGCCCCCACC CACTTCCTGG GCTTTGTGGA TCTGAACCTC CTGGGGAGGA AGAGTTACAG CGTGCCCAAA 001280
001281 GTGGGCACCA CACAAGTAAC ATTTAACCCC AACCAGACTG TGGTGAAGAT GTTCCTGGTG ACCTTTGACT TCTTGGACAT 001360
001361 GGCTGCTGCC ACATGCCCTT ATTGTGCCAT TGCCTCTTTT TGGTGCCTGT GGGTGAGGAG AAAAATGCTA ACCCCACCTA 001440
001441 CTGCCTCCTC TGCTACTCGC TGCACCTTGG GTTCTGGAGC TCCCGCTCAG GCCTCTTAAG CCTGAATGGA GATCTCTGCC 001520
001521 AGCTTTTTTC CTGCTAGAGC CTGGAGCTGG ACGCAGGGCT CCCCTGCGAA CTTCAGGCTG TGACTGGGGC CCCTCTTAAC 001600
001601 CCACGTTATT CACTTTTGCC CTGA
[back to top]

Predicted Small Protein

Name NONHSAT091269_smProtein_1328:1498
Length 57
Molecular weight 6036.0564
Aromaticity 0.125
Instability index 57.2732142857
Isoelectric point 8.50396728516
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0292224998107
Amino acid sequence MFLVTFDFLDMAAATCPYCAIASFWCLWVRRKMLTPPTASSATRCTLGSGAPAQAS
Secondary structure LEEEELLHHHHHHHLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii