NONHSAT091359
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091359 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1814 nt |
Genomic location |
chr3-:117711344..117713157 |
Exon number |
1 |
Exons |
117711344..117713157 |
Genome context |
|
Sequence |
000001 CTGTTGTTCT TTTTCCAAAT ATCCTAGAGT ACTTTGATAT AGTTGAGTAT ATTCATCTAT GCAATGTCCT TGTGATGTTG 000080
000081 GTAGGGAGAA CTTCTAACCT TTTGTGCAAT GACGAGAAGG TTATATAATG GCCCAGCCAG GTTTCATCCT TGATATCCTG 000160 000161 GCAACTGTAG TTTATATTAA TGACATCTCC ATTGATAAAG GGTCTCTGAG GTTTCCAGAA GAAAGTTTTT TAGATATTCA 000240 000241 TGAGTGTACT AATATCATCA ATTTACCTGT AACTTTGATT AAGCAAAGAA AGCAAACCCA TACACACACA CAAACAAACA 000320 000321 AAAAAAACCA CTTTTCTCAG GACTTTCCAT TTGTTCCCAG CTTAGTTTGA GGTCCTGCTT CATTGGCTTA GATCTGGCCA 000400 000401 GGTCTGTTTG TCATCTGGCA TCTGTCTCTT CTTTCTCATG CTCCAGATCC AGAGCCAGAG AGCAGCCACT GCTTTGCTCT 000480 000481 GAGGTTGGCT CTATTTTCTC CCTTTGGCAT ATGGGATGGC AGTAGCCCTG TGCCCTTTTG GTACTGCAGA AGAGATGGAT 000560 000561 TCCACTTGGC CCATCCCACC CCCATCTCTG GTTCACCTGG GCATGAAGGT TTCCTTGGCT TCTGCCTGCA GCCATATTTG 000640 000641 GGCTGCTTCC AGGAGAAGAG AAGAATGTAG TGACACTGCA GCAGAGGCAG CTTAGCCGAC AAACCCCCAA CCCCAACACC 000720 000721 AGAAGAGCAG GGAGTGCTGC TGCTGATTAG TGAGGGAGCA GCAGAAATGC CTAGGATGGG AATGTTCTGT CCAACTACTA 000800 000801 TGAGGCTTCC ATTAAGAGCT CTGTCTAAAC TGCTCACAGC GGCACTCCCC AGCCTCCTCC CAATAGTTCC AATGAAAACG 000880 000881 AGTTGGTGAA ATCTCTTTAG AGGTTTTTGA CAAGTGCCTC TGCCAAAGAA TAAAAATGAT ACCCTTCAGG AAATATATTT 000960 000961 TAGAGTCCAA GATGTATATT GTTTTAATAT TAAGTACAAT AGCAACTAAT TAAAAGAttt tttcaagagg cactgtctct 001040 001041 gtcacccagg ctggagttca gtggcatgat aatagctcac tgtaacctca agctccctag ctcaaaggat cctgccacct 001120 001121 cagcttccca agtagcttag actacaggca cacaccacca ttcccagcta atgttgtttt ttatttttct tttttgtaga 001200 001201 aatgggatct tactatgttg cccaggctga tcttgaattc atgacctcag tgacgctctg gccttggcct ctcaaagcac 001280 001281 tgttattaca ggtgtaagcc accgtgcctg accTATTTCT AATTTGACTT ACCCAAGTAA TTTTAAAAGA TTTAAAGCAC 001360 001361 CATCCATAAG GTATAGTTTT CTGCTAGGTA GGATTTTTGA TGTTATCTCC TTTGTTTCCA GCAACATTGG TAACCTAGAA 001440 001441 CTGAGTCAAT GATGAGCATT GACTACACTA TGAAGCCTCT CTGTTTAAGA TACAGGAGAA ACTTAGCTCC TTTaaaaaaa 001520 001521 aaaaaaaaaa aaaaggtgtg gtggctcatg cctgtaatcc cagcactttg ggagggaggc tgagactggc agatcacgag 001600 001601 gtccggagtt caagaccagc ctggtcaata tggtgaaact ccatctctac taaaaacaca taaattagct gggtgtggtg 001680 001681 gcaggcacct gtaatcccag ttactcagga agctcaggca ggagaaccgc ttgaaaccag aaggtggagc ttgcagtaag 001760 001761 ctgagatcat gccactacac tccagcctgg gcaacaagag tgaaactcca tctc |
Predicted Small Protein
Name | NONHSAT091359_smProtein_515:694 |
Length | 60 |
Molecular weight | 6258.1053 |
Aromaticity | 0.0508474576271 |
Instability index | 76.5745762712 |
Isoelectric point | 5.04803466797 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0232038761451 |
Amino acid sequence | MAVALCPFGTAEEMDSTWPIPPPSLVHLGMKVSLASACSHIWAASRRREECSDTAAEAA |
Secondary structure | LEEEELLLLLHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |