NONHSAT091359

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091359

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1814 nt

Genomic location

chr3-:117711344..117713157

Exon number

1

Exons

117711344..117713157

Genome context

Sequence
000001 CTGTTGTTCT TTTTCCAAAT ATCCTAGAGT ACTTTGATAT AGTTGAGTAT ATTCATCTAT GCAATGTCCT TGTGATGTTG 000080
000081 GTAGGGAGAA CTTCTAACCT TTTGTGCAAT GACGAGAAGG TTATATAATG GCCCAGCCAG GTTTCATCCT TGATATCCTG 000160
000161 GCAACTGTAG TTTATATTAA TGACATCTCC ATTGATAAAG GGTCTCTGAG GTTTCCAGAA GAAAGTTTTT TAGATATTCA 000240
000241 TGAGTGTACT AATATCATCA ATTTACCTGT AACTTTGATT AAGCAAAGAA AGCAAACCCA TACACACACA CAAACAAACA 000320
000321 AAAAAAACCA CTTTTCTCAG GACTTTCCAT TTGTTCCCAG CTTAGTTTGA GGTCCTGCTT CATTGGCTTA GATCTGGCCA 000400
000401 GGTCTGTTTG TCATCTGGCA TCTGTCTCTT CTTTCTCATG CTCCAGATCC AGAGCCAGAG AGCAGCCACT GCTTTGCTCT 000480
000481 GAGGTTGGCT CTATTTTCTC CCTTTGGCAT ATGGGATGGC AGTAGCCCTG TGCCCTTTTG GTACTGCAGA AGAGATGGAT 000560
000561 TCCACTTGGC CCATCCCACC CCCATCTCTG GTTCACCTGG GCATGAAGGT TTCCTTGGCT TCTGCCTGCA GCCATATTTG 000640
000641 GGCTGCTTCC AGGAGAAGAG AAGAATGTAG TGACACTGCA GCAGAGGCAG CTTAGCCGAC AAACCCCCAA CCCCAACACC 000720
000721 AGAAGAGCAG GGAGTGCTGC TGCTGATTAG TGAGGGAGCA GCAGAAATGC CTAGGATGGG AATGTTCTGT CCAACTACTA 000800
000801 TGAGGCTTCC ATTAAGAGCT CTGTCTAAAC TGCTCACAGC GGCACTCCCC AGCCTCCTCC CAATAGTTCC AATGAAAACG 000880
000881 AGTTGGTGAA ATCTCTTTAG AGGTTTTTGA CAAGTGCCTC TGCCAAAGAA TAAAAATGAT ACCCTTCAGG AAATATATTT 000960
000961 TAGAGTCCAA GATGTATATT GTTTTAATAT TAAGTACAAT AGCAACTAAT TAAAAGAttt tttcaagagg cactgtctct 001040
001041 gtcacccagg ctggagttca gtggcatgat aatagctcac tgtaacctca agctccctag ctcaaaggat cctgccacct 001120
001121 cagcttccca agtagcttag actacaggca cacaccacca ttcccagcta atgttgtttt ttatttttct tttttgtaga 001200
001201 aatgggatct tactatgttg cccaggctga tcttgaattc atgacctcag tgacgctctg gccttggcct ctcaaagcac 001280
001281 tgttattaca ggtgtaagcc accgtgcctg accTATTTCT AATTTGACTT ACCCAAGTAA TTTTAAAAGA TTTAAAGCAC 001360
001361 CATCCATAAG GTATAGTTTT CTGCTAGGTA GGATTTTTGA TGTTATCTCC TTTGTTTCCA GCAACATTGG TAACCTAGAA 001440
001441 CTGAGTCAAT GATGAGCATT GACTACACTA TGAAGCCTCT CTGTTTAAGA TACAGGAGAA ACTTAGCTCC TTTaaaaaaa 001520
001521 aaaaaaaaaa aaaaggtgtg gtggctcatg cctgtaatcc cagcactttg ggagggaggc tgagactggc agatcacgag 001600
001601 gtccggagtt caagaccagc ctggtcaata tggtgaaact ccatctctac taaaaacaca taaattagct gggtgtggtg 001680
001681 gcaggcacct gtaatcccag ttactcagga agctcaggca ggagaaccgc ttgaaaccag aaggtggagc ttgcagtaag 001760
001761 ctgagatcat gccactacac tccagcctgg gcaacaagag tgaaactcca tctc
[back to top]

Predicted Small Protein

Name NONHSAT091359_smProtein_515:694
Length 60
Molecular weight 6258.1053
Aromaticity 0.0508474576271
Instability index 76.5745762712
Isoelectric point 5.04803466797
Runs 7
Runs residual 0.0258124708443
Runs probability 0.0232038761451
Amino acid sequence MAVALCPFGTAEEMDSTWPIPPPSLVHLGMKVSLASACSHIWAASRRREECSDTAAEAA
Secondary structure LEEEELLLLLHHHHLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -