NONHSAT091398
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091398 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1179 nt |
Genomic location |
chr3-:119382857..119384615 |
Exon number |
3 |
Exons |
119382857..119383529,119384098..119384323,119384336..119384615 |
Genome context |
|
Sequence |
000001 CAGAAAAGTA ATTTACCTCC CTGTTAGGAA GTTTGGAAAT TAAAAGCTCC TGGTTTGAGA TAGTGGCTCA GTGGTGCTTT 000080
000081 CAAGAACTTA GTCTTGGCTG GGTGTGGTGG CTCATGCCTG TAATCCCAGC ACTTTGGGAG ACTGAGGCCA GAGGATTGCT 000160 000161 TGAATCCTGG AGTTCAAGAC TGGCCTGGGC AACATAGTGA GAACCTGTCT CTACAGAAAA TAAAAACATT AGCTCGGCAT 000240 000241 GGTGGTACAT GCCTGTAGTT CAGTTACTTG GGAGGCTGGG CTTGAACCCA GAGGACTGAG GCTGCAGTGA GCCGTGATTG 000320 000321 TGCCGCTGCA TTCCAGCCTG GCTGACAGAG CAAGGCCCTG TCTTAAAAAA GCAAGCAAAC AAAAAAACCT AGGCTTGTTC 000400 000401 TATTTTTCTG CTCTTTACCC TTCTCATCCT TAGGCATATC CTATCTCATG ACTATGGTAA CTTCAAGCAT TACATCGTCA 000480 000481 CGCAACTATT CAAGCCTGGA TGAAAGCATG AACCAGCATG GACAAGTAAC AAACAGTTTG AAGACCAGGC TGAGTTCATG 000560 000561 ACCACACTTG TTGACTCTGG TGACTTCATA AGATGGCCCC CGCCTGCCTC GCCTGCCTCT TGTCTGCTGC TCCTTTTGAT 000640 000641 TCACCTACAA CAAGCTGTTC TCTGTTACCA GAATATGCCA CGTATTTTGT TTTACTTCTG GGACTGACTT TACAATCTGT 000720 000721 TCTTTCTTCC TGGAATGCCC TCCTCTAGCT GGGGAAAACC TACTCATCTT TTTAGACCAG ATTAAAAGTC ACCTTCCCTG 000800 000801 TGATGTTTTC TCGTGGAAAA AAATATTTTT TTAAGAGACA GTGGTCTCAC TATGTTGCCT AGGCTGGTCT CAAACTCCTG 000880 000881 GGCACAAGTG ATCCTCCCAT CTCAGCCTCC CAGAATACTA GGATTATAGA CATAAGCCAT CACGCCCCCA ACCTCATGAA 000960 000961 TTTTAGTTAG GTTATAGCAG TATAGTAAAA GTCCCTATGG ATTGAATTAT TTGCTCCCTC ATAAGTGTTT TTTCTTTGAA 001040 001041 TCCTAAGTAC ACTTATTTTA TTGGATTACA GTTTCTGAGT CAGTATCCGG GATAGACTGA AAGTTTCTTG AAGTGATAAT 001120 001121 TGTCTTATTC ATCTTTATAT CCCCTGTTCT TGGAACACAT AGTCTGTCCT GAATAAATG |
Predicted Small Protein
Name | NONHSAT091398_smProtein_557:706 |
Length | 50 |
Molecular weight | 5695.6977 |
Aromaticity | 0.142857142857 |
Instability index | 86.6104081633 |
Isoelectric point | 5.41937255859 |
Runs | 8 |
Runs residual | 0.00121345835632 |
Runs probability | 0.0158761702879 |
Amino acid sequence | MTTLVDSGDFIRWPPPASPASCLLLLLIHLQQAVLCYQNMPRILFYFWD |
Secondary structure | LEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |