NONHSAT091526
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091526 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1549 nt |
Genomic location |
chr3+:123303544..123331503 |
Exon number |
4 |
Exons |
123303544..123304400,123304489..123304641,123330082..123330202,123331086..123331503 |
Genome context |
|
Sequence |
000001 CCGGGGCCGA TTCAGCGCTC GGCCGCCCTC AGCGCCCAGG TACCGGGTCC CGGGCACCCC CCGCCGGGAA TGCACTGCCT 000080
000081 GCGGCGGGCC GCGCCGATCC TATCCGCCCC GCCGCTGGCC GCAGGGCTCC CTCCCCGGCC GCGCTGGCTC CCCGCCTCCC 000160 000161 CGAGCCCCAG CCTCACCCGG CTGTCATCAC CACATTGTAG ATGACCAGGT ACGCCGTGGC CAGGGGCCCC GGGCCCTTCT 000240 000241 TCTTCCGCGT gccgctggcg tccccggccc cggccctgcc accgccgccc ccattcccct tcgctgctgc agtcgccgcc 000320 000321 actgccgccA TGTCAAGTGC CCGAAGCCCG CTCTCCTAGC GCGAGCGGCT CGGGCCGGAC TACGCGAgga gagggggcgg 000400 000401 aggaagggac gaggggcagg cggggccagg gccgcggggc ggagccgggA CAGGGTCCAC GGCAGCCGCC ATCTTGGCTG 000480 000481 AGGGCAAAGA CGCTCCTGGC GCTCCCGTCT TTCGGCTTGC CTCAGTTGCC ACTGCCATCT TGGATCAGGG TAATTCCCGC 000560 000561 CTCTTGGGCG CTCCCGGTTA CAACCTCGGC GCCATCTTGG ATTAGTTCAA TGTAGCCACC CTCTCCAGGC CCGCTGCTTC 000640 000641 TGCCAGCTGG ATGTTGCGTC GTCCCTCGCT ATTCGCCCTC CTATAATCAC TGCTTCCATG TTGAATCAAA ACAATTATGC 000720 000721 TTTCGTTCTC CCTTCTTCAA TTGCCCTATC TTCACACCTG AACACTATTG CTCCGGTATC CTGCCATTTT GGATCAGGGC 000800 000801 GGTTGACGGT GGATTCACTT CCCATCAGCC CTTGAGGCTG CAGGGACCAG CCCTTTGTAC AGTGGAGAAG CCCAGGCGGC 000880 000881 CTAGAATCCA GTGTCGTCCG TGAGTGCTTG GCTGGTGTTC AAGTGCATCT TCCAGCCTGA GACCGCGTGG ACTCGCTCAT 000960 000961 CGTGAGGGCG AGAGGAGGAT AAGCCCATTG GGCTGTCGGC TGAGAGTGAG ACCATCCACA ATATTGTTTG AACATCTGAA 001040 001041 GACATGGGGA ACTTGCCATC TGATATCTGA TAACAGACTT CCTGTAAAGC AGGACTGGTA GTTTCCTGAT AACAAATTCT 001120 001121 TCAATATGAA GGATATAGCT GTGTCCTTTA CAACTGGTAG CATGGAAAGA AAGAGAAGTC TGCAAAGATT GAACAAACAG 001200 001201 CATGCACTGT GGTATCCTTT ATTTAAAAAT TGTGAGCTGA CTACAGTTGT AGTGTTCTCA TTTACCATTC TGATGGCATA 001280 001281 ATAAACCAAG AGAACATTAA CACAATTCCA AGAAGGCATT AACCTGTAac acacatatac gccacacatg cacacacaca 001360 001361 acatacacgc acacaAAGGT TATATTCTGA ACACAAAAGT GATAGAAAAA AGCTTTGAAT GCGCTAAATC AAATAAAAAC 001440 001441 CCTTTATTAT AATAAACTGT GGCAATACTG TGGCTATCAT GAAAAATATT GTAACTATTT TAAAAGCAAA AGGAAAAATA 001520 001521 CTGGCAGTTT GAAACTAGCA GCAAAAAGC |
Predicted Small Protein
Name | NONHSAT091526_smProtein_200:358 |
Length | 53 |
Molecular weight | 5282.1501 |
Aromaticity | 0.115384615385 |
Instability index | 96.3788461538 |
Isoelectric point | 12.0042114258 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0361243596538 |
Amino acid sequence | MTRYAVARGPGPFFFRVPLASPAPALPPPPPFPFAAAVAATAAMSSARSPLS |
Secondary structure | LLEEEELLLLLLEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii |