NONHSAT092369
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092369 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3262 nt |
Genomic location |
chr3+:139155377..139165157 |
Exon number |
2 |
Exons |
139155377..139156501,139163021..139165157 |
Genome context |
|
Sequence |
000001 gttgaattgt tttcctccac aaaattcata tttcaattcc taacccccag tacctcagaa tgtgagcttc gtcagaaata 000080
000081 gactcattgc agttgttatt agttaagatg aggtcataat gaggtagcgt ggacccctaa tctactgtga ctggtgtcat 000160 000161 tatacagagg gcaaattcag agactcattc agggagaaca gggaatatga aggcagagtt tggggtgata cagcagaagc 000240 000241 caaggaatga caaatcctgg aaagcagcat ggaacaggtt ttccctcaca gcgcttagaa ggaaccaatc ctgccaacaa 000320 000321 cttgatcttg gacttctatc ttctagaact gtgagaccat acagttctat tgtttaagcc acccactttg tggtactttg 000400 000401 ttatgacaac cctagcaaat taatacTAGA GGGAGGACTA GATGTTGGGG AATCCATCAC CATGACCACT GTGCCTACCA 000480 000481 TTAGGTAGTG AATGTTAAAT TAATATCTCT ACTACAGTGT ATGTCTAAAA TGTGagaaaa gcagcagcat gaaataaaag 000560 000561 gtgcccaggc tttggaatcc agagatctgg gtttaagcta tgcccctgac tagctatgtg actttgaacC CTTTAACTGT 000640 000641 GAAGTCCACC ACTGAGATAT GAGATGGGAT ATCCATGATC AATTATTAGC ATAAAAGATT TCAAAGACAT TTCCCTCCCT 000720 000721 CAGTCCACCA ATGAGAATAC CCACCAATTT TCCACCTGCT TCAATTCTAT CCCTACCTCA ATTCCTCTCT ACCCCACCCC 000800 000801 ACACCAGGCA AGTTTGAAGT TGTTTCTGAA GAACTAATTG AGTagagaag gacaagaaag tagaaaagaa agaagaaaga 000880 000881 gaggaagaaC TTAGACTTTA GGGAAGGAAG TCAGTCTGTA GAATAAAGAT TTAAGAGAAG GAAGGGAGGA GATGAGGGGA 000960 000961 GAAAATGTTG AGATGGCTGG GAGTAGAGAG AATTTTGAGG GCCTTTAGCC AGTGAAGGGC ATCAGTGAGA GTGGAGTATA 001040 001041 CGAGATTTAG GTAGAAGAGA AAATAGATTT TCAAGGAGAT TTGTTAGGGG TTATGGATTA GATCTCCCTA TTACATTTTC 001120 001121 AAAAAtagag catgttacaa atagaatatc attCCTCTGT GGCTAGTGGA TTACAGGGAA CTCTTTTATT TTAATGAGAA 001200 001201 ACACATAAAC CATTGACTTT GGGTCTTCCA ATTTCTCCAG TTAATTTGCA GGTTCTCCCT CTGCCTGCCA CCCCACCCAG 001280 001281 CAAGGAGGAG AGGAAGTGTT GAGAAGGGAA GAGATgagtc ctggccctgt cacttcttag gggtgtgctt ttgaacaacc 001360 001361 tgctcaccat gtatgaactt cactcttctt gtttataaaa tgaggacaat gacacctgca agactgtgag gtttaaaAAC 001440 001441 AAAAtctgtg ttgagaggta acttgcctct tttacttacc aatgatttcc tcaatgcctg gtgactgggg ctggttcata 001520 001521 ctagacgatc aataaatgct ccttgaatga atAGGTGGAT GAAAGAAATG TCTGGCATCT ATCACAGGTG CTGGCACTGA 001600 001601 TAAGTGCTTG ATAAATAGGC TGGCTGACTG TGAGTGATGC TGACGGGCAA AGGACAGAGA CACCAGGAAG GAGAACAGGA 001680 001681 CACGAAAGAT AACTGTCTCA GCCCTTGGGG AGTTTCTGAC CCAGGAGGAT GGGAACATCA ATTATCAATA GTTACAGATC 001760 001761 ATTAAATAAT TGCAAGTGTG AGGCGCACTA TAAAGAGGAG GCTCAGAGTC CCCGCATGCT CACACTCACA CCTGGCCACA 001840 001841 GACAGGTGAC ACCCCTGGCT TGCCCAGGCC AGCGGGTCTG CAATGAGGCC AAGGACCTGG GCTCTTGAGA AGTTTTAAGT 001920 001921 TTGAAAACAT TGCTTTTTAA GCTTAAAACA ATGAACCTTA ATAAAAGTAA ACACTTCCAT TGAGCTTTGA AACACTTAAT 002000 002001 AGGAGTTAAA AGTAATTAGG CTAATAAAAT AGTCTTTTGT TCCAATTCAA TAAGTGCTTT CTTTTATTAA CTTCATTGTC 002080 002081 CTTTAAGATT GGGATTAAGG TTTGTCTGCA TTTGGAAAAG GTCACATTTG CCCAAAGACT GATGGGTGAT AAcagtaagg 002160 002161 cagccccctg cacagggaga ggccagtaag agcctgggct ccatgaaact gcatttcaac tccaaccctg atgtcctgcc 002240 002241 tgtctcctgg gcatgtttat cttacactgc taagcatcag tctcatttgt acagtgagaa taatatcact gtgtaaggtt 002320 002321 gtattgagaa ttaagagagc tcacgtatgc ctgtaaagta cctggcatac cgcagggtac aAGGAGGGCG TTGTTAGCTG 002400 002401 TGATGGCCCC TTTCCTTCTT CCCTTTACTT CAGAGGTGAC CTCTCCAAAT CACATTTAGT CCTTAAACCT CAGGTCAGGC 002480 002481 GATAGTGCTG ATGGGCAACC CTCCCACCCA GGTTTGGCTG CAAGTCActc ctctgggctc ctctgggctc ctACAGCCTC 002560 002561 CCGCATGGTC CCTCTCATGC ATCCTTGTGA TGGTCTGACC AGGAGCTTCT TGAGGACAGG GGTTGGGGCC ACTTGCCTGC 002640 002641 GTGCTTCTCC Atgcccattt gctatcagat gccttcccct ttctgctctg cactgcgggg aactacattt tccaggctcc 002720 002721 ctgggcagtg gcaggcttcc ggctagtttc taccaagggg agcgctgatg ggagatgaaa aagtgggaaa aaaggagaag 002800 002801 ccaggatgct tctctgtctc gtcttccttt ttctctttca ggggtttttg gtagtggctg tgtctccctg atagctcctc 002880 002881 tctatgatcc agccctgctt ggcagccctg gcttctgggt tctgaaaaca ccacgttcct ccttgtgtcc ctctatctag 002960 002961 taattggcag ctttctgatg ttgctaagtt ctgacttgct tcaccatctc ctatttggct cctcagcttt tccatcttct 003040 003041 gtgtaacctg ttccccgtac taaatttcct ctgtgtgaaa tgcctagcat ggtttctgtt tccgtggtgg gactcagacg 003120 003121 gatacaTTct gtgtccctaa gcctctgaca cagcacctga cccatgatag gatctcagga agctcttttt tggctgagta 003200 003201 catTTCCCAT TGTAATATTC CCCAAAGGTG GGATTTTGTT CATCTTTTTA CAGGCTTTCC TC |
Predicted Small Protein
Name | NONHSAT092369_smProtein_2564:2767 |
Length | 68 |
Molecular weight | 7158.3443 |
Aromaticity | 0.0746268656716 |
Instability index | 60.5971641791 |
Isoelectric point | 8.80780029297 |
Runs | 7 |
Runs residual | 0.0388372274752 |
Runs probability | 0.0448305448305 |
Amino acid sequence | MVPLMHPCDGLTRSFLRTGVGATCLRASPCPFAIRCLPLSALHCGELHFPGSLGSGRLPA SFYQGER |
Secondary structure | LLLLLLLLLLLLHHHHLLLLLLEEELLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLL LLLLLLL |
PRMN | - |
PiMo | - |