NONHSAT092544
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT092544 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3389 nt |
Genomic location |
chr3-:145767418..145770803 |
Exon number |
1 |
Exons |
145767418..145770803 |
Genome context |
|
Sequence |
000001 GGCCTTTTTT TTTTTTTTTT TTGGTTAGAG AGACGAACTC TCCTCTCTCA GAGTTTTCGG TACCTGCCTG GTTGCCATGA 000080
000081 CTACCACCAC AAAGTTGGAG ATTCAGGAGT GAGGGTTGCT GTAAGCAAAG TTGAGGAGAC AAGAGAAGCT CGGGGAATTC 000160 000161 CCCCAACTTT TTCTGCTTCA TAGAGACTCT ACTTCCCATG CACAAAACCA AAATAAATAG AATCATAATT TTAAAAAAGT 000240 000241 GTATCTTGGA GCTCTTCCTG TCTGTGCCTG GTACATTATC TATTCTGGGA TATTATCCTC TAAGGCAAGG AGATATGGGT 000320 000321 GGAAAAAGAG GAAAACAAGA AAACTCCCCA CTGGATTGCT TGTACTTTGG GTTCTGGATT TCTTGCTCAA TCCCCCTGCT 000400 000401 ATCATTTACT TTTCAGAGTT CTCAAGTAGC TGCTTCATGC ATTCTGTGAA GGGCTCTTGA TTTCATTCAG TTGAGACAGA 000480 000481 ATTCAGTTAC TTTATCTCCT TTGGATCTGA AACTGTCACT TAAGTTGAAG TTACTTCATC TTCAAAATGA ATGTGATTAA 000560 000561 TACTTGCCCT TTCTAACTCA CAACATATTT ATGGAAGTAA AATAAAATGG CATATTTGGA AGTATCTCAT AAATTGTGTG 000640 000641 ATAGTGGTAA TATATTGACC TTTTAATATA TATACACATA GTTTGAATAT ATTTTTTCCA TTTCAACTTT ATCATTCTTG 000720 000721 GCAATTTCCC AAGTAGAAAC TGCCATGTTA TGTAACTGCC ATTATGTTGT CCGAAAAGTT GGGAAACCCT ACGATAAACA 000800 000801 AAGCTAAACA GATTTACTTA CTGCAAGACT TCTTGAAGTC TCTGATAGGT TAATGTGCAT TTTGAATTCC CAAGATATAA 000880 000881 TTGAACAGAT TTCAGAATTT ATCTCTCAGC TGTTTTATCT TCTATTGGTC TCTTAAACAG AAATAAATGC AGAATGATTA 000960 000961 TTTTGTAAGC ATTCTAGAAA ATTCTTCATA TTTAACATCA ATAAGAATGT TGTAAGCTTT GGCAGAACCT TTACTCCCCC 001040 001041 TTTAAGTCAC CTTTCAAGCC TTGCTCATAG ATAGAAATAT GGCTAAAGAA AGAAAAGATA TTTCGGAGGT AACACAGGGT 001120 001121 TTTAAAGAAA CACACAGATG CAAAGCAAAA TATTATATAT CTGCATATCT TCCTGATGTT TCATTCAAAT AAATATGTTC 001200 001201 TGTGGCTTCA TTTTTCAAAC CATGGCTTAT TAGTGTGATA GTAGTTAAGA GATATTCTTA AAATTTGGTA CTACAGTAAA 001280 001281 AATCCAGGCT GCACATTTGT GCTACAGTAT ATTTCTTATA CTAGAGATAA AACTTATGTC TTTAGAAAAG TTTTATCTAA 001360 001361 ATCCTGATAT ATTTGTACTT CCTACTTCTT TCAGTTAAAA ATAATTTTTA GAATTTAGAA ACATAACACA ATAAGTTTCA 001440 001441 CAAATCTAAC CTCACTTTCT TTGTTGGACT TCCAATTATT TCCTGTCTTT AAAAGTTAAA ATGGGAAACA TTTAAAATGA 001520 001521 TTTATCTCTT CTAGATATTT GTGTAAATAA GTTTATACTA AGAAAAAGTG CAAGTAGAAT CTATACTTCA TAGACAAGAA 001600 001601 AATGAAGACA ATATAACTTT AGACAATGAA TTTAACATCT TGAAAATTAA GTATTGACAT TATCTCATAA ATCAGTTTAA 001680 001681 AATTTCACAT TCACCAAGTA AGACAAATAA TTATGGAAAA GAGTCACTGA ATTATCAACA TGTTGATCTA TATGTATGCT 001760 001761 CTAAAAGGTG GTAAGCAAAG AGAGGAATTT ACATTCACAA AAGTCCTGGA CTTTGACCAA GAATCAACTT AAAAATAATT 001840 001841 ATTATGAATT TAATCACATT ATAATCCAAT TGTAATTGTG ACCCTTATTT GCAACTACTT CTTCCTGGAG AAACTTATCA 001920 001921 GCCCCTAAAT GCTTGTGGTC TTATGCCACC CAGACAGTCC TAGGGTTTTC CATTCATGCA TTTTTGAGAG TACAGACTAC 002000 002001 CGTTTCTTGC AAATTTACAC ATTTTGGTTA AATAAAGCAT AAAGAGTAGT AATTCAAGCT TAACCACAGT AACATGTCAC 002080 002081 ATTTGGGGTC AAGTCTGGAT ATATCTAGCA TCTGACCAAC ATCTGTCCTG TGTTATTGAG AGATCAACTG TACTTTCTGA 002160 002161 AGAACAACGT TTTATGGACA GTATGTTAAG GCATTGCGCA AACACTCCAC GTTTTTTTCC CTAATTTAAA CAGTTTACAT 002240 002241 AGTTCTTTTT TTTCTTTTAT TGTAAACGGG TTAAAACATT TATGAAATAC TGCATTAGAA AAGGCTAATA TTCTCCCTAT 002320 002321 TTGTAAAGAA TATTTTTATT TCTAGATAAT AAGTTGTGAT GTATTATTTG TCTCCTCATC AAGTCATCTA AATGTCAAAG 002400 002401 TTTATGGGCA GATGTAGGCC TCTGGCTGCC TGTAAGCCAT TTAAATTTCT CACCTACTTC CACTATTGAG GCTGAAAAGT 002480 002481 GAAAATATTC CATTTCCAGT CTTCCCTGGG CAAGACATCG TATCAGCCCT GAATTTAAAG TCTATATTTT TGAAAAATGG 002560 002561 AATTTTAAAA GATTGTGGAG ATGTCCTAGA TTATGTGCTA TGGAAAAAAA AGAGAATATG ATGTTTTTAA TTCTCAAGAT 002640 002641 TAAAGCAATC AAGAAAAAGT TGTATTTTTT AGATAAAAAA TATAACAAAA ATTTTTACTA TAAAGCCACT TTTATCTGTT 002720 002721 TTTAAAATCT AATTCAGTTT TAGTTTGAAA CTGTTGTTCA AAGGTAACAC CTGTGATAAG AGACACAAGC TGTTTCAGAA 002800 002801 AGTGGCTGCA TCAGAAAGCA AGCTGTTAAG AGTTGCAGGT TGTTAAATTC ACTCTGCAGG GCAGTAGATA AAAAGTGTTG 002880 002881 TTGCACTTCA GCTTTAGTTT ATTTCAGAAG CTTCCTAAGA AATCAGATCT GAGGCTATGG TAGCCTAGGC ACTAAAAACA 002960 002961 ACAACAGCAA CAACAACAAA AAACAAACAA ACAAAAAACA AGAAATCAAA CAAAAAAATA CACAGCAAAA CCTCAGGGAA 003040 003041 ATCTCCACCT GGGGGAAGTT TACTTTGTTG GCTTTTTATG CAGAGGGCCA CTGAGTGATC CTAATCTGTT CTGTCATTTT 003120 003121 CTACCAATTG GGAAGAAAGG GTATGGGAGT TGAGAACTGG AAATACTAAT GAAGAAGAAT TTCTGATGTT TAGCAGAAGT 003200 003201 ATGTGATATC TCTTGCATCT TGGGGCTTCT TTGAAGCCTG GTATTGCTGG CTTATATACC TGGACCTGTC AGAGTTTGAT 003280 003281 TTTCTCACAC AGCTAAAATG TACAAAGTAT AAGCTCATTA AAACAACATA ATGGCTTAAT GAAAATTTGC TGAGGTTTAT 003360 003361 TAAAATAAAT TGCTAACCAA GGCAATGAT |
Predicted Small Protein
Name | NONHSAT092544_smProtein_197:448 |
Length | 84 |
Molecular weight | 9299.9871 |
Aromaticity | 0.10843373494 |
Instability index | 67.9096385542 |
Isoelectric point | 9.26690673828 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0654885654886 |
Amino acid sequence | MHKTKINRIIILKKCILELFLSVPGTLSILGYYPLRQGDMGGKRGKQENSPLDCLYFGFW ISCSIPLLSFTFQSSQVAASCIL |
Secondary structure | LLLLLLLEEEEHHHHHHHHHHLLLLEEEEEEELLLLLLLLLLLLLLLLLLLLLEEEEEEE EEELLLLLEEEEELHHHHHEEEL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH HHHHHHHHHHHHHHLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiTTTT TTTTTTTTTTTTTTooooooooo |