NONHSAT092674
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092674 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1979 nt |
Genomic location |
chr3-:149795281..149797951 |
Exon number |
3 |
Exons |
149795281..149797168,149797826..149797901,149797947..149797951 |
Genome context |
|
Sequence |
000001 AGGGTTTTGT AACCAGAAGA AGGAGGTGGA CGTTTCTTCT AAGTGGGAGT CCTAAGGGAT CTGATTGCTG ATTTTTAAGA 000080
000081 GATCTCAAAC ATTTTGTGGG CCATTACAAA GCTCATGTCC CCTATGTCTG TGGGGCCTAA TGATTCAAAC AGCCGTGACC 000160 000161 AGGCCTGCCT GTGTGGCCCA GCCTGGCTGG CATTCAAGTG AATAACATCA TCTCCATCTC ACTGCACAGA AGTATGAACT 000240 000241 GCGGTGTCAG CAGGTTTCCA TGACACCACC GGTGATGTAG AGCACACATC TCTCCCACAC TCTGCTGGTT ACCAGGCCCT 000320 000321 GGCAGTACAG ACCAGGCCTC CTGGGTTGCC TTCCTCCTTC CGGCTCACAG GTTCCTCTTC ACTCCCATGC TCTGCTCCCC 000400 000401 AGACCTCTGG CCCAGAAGGA GTGACCCAGA GCCTGAGGCA GGAGAAATTT TGAGGCGGAG TCTGGAGCTG AGGATGAGGC 000480 000481 CCAGGCCCGG CTAGAGAGAA AACACTGAGA AGGGACTGAG GCCCCCACAT GCTGGAATCT TGTGAAAAGA GGTGAAGGCA 000560 000561 AAGCTGGGGA TGAGAGAGAG AAGACGGAGC AGGAGATTAG CAAGGAAATA AGGTGGGGAA ACAGCTGGGA AGACAGACAT 000640 000641 GCATCTGGAA GATTCCAGAA AAGGCCATTT CATCCAGCCC TGCTCCAGCA GTTTGTATTT CAGCAGCCTC ACGGGACACC 000720 000721 TGGCCTTTCC TTTCTGACAT CGTTCTCCAT CCATCCAGCA CCTCTTGGAG ATCACAAGGG GCTCTCCACA TGAGACTTTT 000800 000801 GAAACTAAGA AATAGATTTG GGTGTTGCAC GTGTTTGCTC TGGAGCCACA TTGCTTGGGC TCAAATCCCA GATCCATGGC 000880 000881 TTCATCACCT ATGAACCTTG GGCACATTTC CCCACATGCC TGTGCCTCAG TTTCCTCAGC TGTGAAATGG AGTGATAATA 000960 000961 GTTCCTACTT TTACTGAGTC ATTGTGACGT TTTCTGTGAA AGGCCTAACA TATGAAAAGC ACTCCATAAA TGTTTAGCTA 001040 001041 TTATTATTTC AAGGAATTGT AAAAACAGGA TCACAAAATT GTGGAATATC ATTAATGTTT ACATTTAACA AATTATACCC 001120 001121 TTTAATTCAG AAAATGCAAT GGCATATAAC TGTGGTATTT ACAGGTAATA TAGAAGTTAA GGTTTTTTCT ATATAATTAA 001200 001201 CTTATAGCAC CCTAGAGGTA GGATGGTTCA GTCATGGGAC GTGAGTTTAG AGCTGAATGA GAAGTATCTG TGTTATGACT 001280 001281 GTATTTATAA CCTCATTTGG AAGCAACGTT AAAAGCCTAA ATTTGAGATC CTTTGTAAAT GTTTGTCTCC AAGCCAAATG 001360 001361 CTTTTTCCTG GTCCCCTTCC TGACTCATGC TCCCACCCCC GTTCATATCT TAAAATGATT AGGGCAGAAA AGGGTGGGGG 001440 001441 AGTTGGAATA GACTCTACTT CCTGCCTCTC TGATTTTACA ATTAGATTAA CAGGGCATAA GGCCTTTACC TCTACAACTG 001520 001521 GATGATTTAT AGTTTTATAT ATATTACACA CACACACACA CACACACACA CACACACAGA GAAAGAGAGA GAGACAGAGA 001600 001601 GAGATATTCA GCCTAATATG TCAGTATAGA TCCTTTTGCA ATTCATGAGC ATGATGATGT GGTATCACAC TTACGTGTGA 001680 001681 GATGTGCCTC CCTCAAACCT TCTTCCTACA GGTTGGCACT TTGCCCACCT GACATGAAAA AAGAAGTCAA TGTAGAAGGA 001760 001761 GAGGTAATAC AAGGCTAAAA CTCACTTGTC CTGTAAACAA CTGAAGACAA GCCAGTCTTT GAGATGAAAG CCTGCAGGTG 001840 001841 CTAGCCAAAA GAGAAGGGTG GGGAGGACAG GTAAACTTTC CCTACCTTAC AATTTGGTTT TTACTCACAT ATGCCCATAG 001920 001921 AAGCTGTGTG TAATGCAAGC AATAAAATGA ATGACTTTCT ACCAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT092674_smProtein_1256:1417 |
Length | 54 |
Molecular weight | 5957.1729 |
Aromaticity | 0.11320754717 |
Instability index | 60.7377358491 |
Isoelectric point | 9.89715576172 |
Runs | 10 |
Runs residual | 0.0284169351127 |
Runs probability | 0.0353117823706 |
Amino acid sequence | MRSICVMTVFITSFGSNVKSLNLRSFVNVCLQAKCFFLVPFLTHAPTPVHILK |
Secondary structure | LLEEEEEEEEEELLLLLLLLLLLHHHHHHEEELEEEEEELLLLLLLLLLEEEL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTTTooooooo |