NONHSAT092772
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092772 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2106 nt |
Genomic location |
chr3+:152557179..152559228 |
Exon number |
1 |
Exons |
152557179..152559228 |
Genome context |
|
Sequence |
000001 TGATGATTGA AGTATGTTTA TTGTAAGGGC AGAAATGTGT TGGCATTTGG ATAAAAAACT GCTAACATTA TAGAACTTAT 000080
000081 TACCTAACAA AATTTCACAC CACAAAAAAT ATTTTAATGG CAAATTCAAG GTGTTTTATT GCTTACAAAT CAGCATCTTT 000160 000161 GACTCTTTGA ACATCAATTT GTGTTTACAT TGAAATGACA AAAAGACAAA CTAAGAAGAA ATACAGCATG CAAGTTGGAA 000240 000241 TTCAGAGTTA AAACCATGAT GTTGCCGCTC AGCCAGCTAT GTGACTGTTG ACCCTTTCAA GAACACACAT GGATTTAAAA 000320 000321 GTTGGATGAC ATCCATTGTT GGGGCCTTGG GGGATATGGT AAAGCATGAA AACTAAACAG CCAGGAGCCT GTGAAATCTG 000400 000401 CTACTGTATT TTCCAGGACT TCATTCCACT CCTTGGCTAA AAAAATCTTG GAAGTTTCAC AGATTATGAT GTGGACCTGT 000480 000481 CACCTGTAAA TTGTCTCAAT CTACTCAGAC AAGACACTAA ACTGTCTTTG GATACTATAG ATGTCAGTGC TTATAGCAGC 000560 000561 TGGAATTTGG CTAGTGACAA TGTTTAAAGA TGTAATACTA GTTAGTATCT ATTGAAGCTT AAACTTTGCT GGTCAGGTTG 000640 000641 TAGCTATTGT AAAAGTATTT ATTGAAGAAG CTCACAGTCC TTCAGTTGTA CAGACTGAAA AACTTTCATG AAAGATCCAA 000720 000721 CATACTAATG TAAATTATAT TTATTACAAT GTATGATATT AATGTGTCAA ACTGGTGTAT TTTACAAAAT ATATAATGCA 000800 000801 TACATAAATA AGAGTTGTAT ATTACAGTGC TTTTCAAATA TCAGTGTCTT GGAATATTTA AGTCTTCACA TTTTTTGGTC 000880 000881 TAAAATATGA AAATGTTTCA TGATACAAGT GATTAATTTT CCCTAGTAGT GCTTTTGCAT GTTTGCCTTT TTATTTAAGT 000960 000961 TTTTTTCTAT ATAGACACAA TTTGGTGTCA GACTATCATA AGATCGATAG TGAATATAAA ATATCTTAGC CAAATGGGGT 001040 001041 CTGTATTGTC TACATTTTAT ATATTAAATA AAAGTTTTTG TTGTCTTTTC AGGAGGTTTA GAGTATTGTC ACTAAATATG 001120 001121 ATCAAAGCTT CCCTTTCCAA ATGCAAAAGT CTTGTCCTAC ATTTAAAGTT GATCTGTCAT GTTTTAGCAG TCAAGTGGGA 001200 001201 TGGGCATTAT ATAAACAACG TTACAATGTA AGGAAAATCT TTAAGGAGAT GGGGAGAGAA AAAGGCAGCT GGTATAATCG 001280 001281 GTTACTGCTG CTTAGTTCTA CTTAATTTTT TGTGTTGCTT CTTCTTAAGG TGAGATAGCA TAATCTTAAC TGTTTTGAGA 001360 001361 TGGAATTTTA AAGTAACACA CTACCAGCGA GTTCAACACT GCTATTGATT TTAATCTGTT TTTTTTTTGT TTAGTTGATA 001440 001441 ACTTAAATTC CAAGTTTCAT AGTGATAATT GTATATTATT TGGCTGCTGA ATTCTGTTAG AGTTTTTTAT TCTGTTGTAC 001520 001521 ATTGTATTAT ACACATAATC ACAAATTAAT ATGAAGGTGA ATATATGTTA CATATCAAAA TTTGTGAATT TGAATTATAG 001600 001601 TATGTTTTAG TGCTATTGCA AAAAATGTTT ATTTTTATAT TATCTGTGAT TTTAATATAG ATGATTGAAC TAGATTTCTT 001680 001681 TTTGAGTGAT AGTGCCATTG AATGAGCAGT ATGGAAACAG TGTTACTTGA TATTTTGAGC TTTCTCAGGT TTATCTAAAT 001760 001761 CAGTGGTAGC TTAACAAAAC CCAGACTAAT TGTGTGTAAT TGTATTTTTA ATAAAAGGAA AGTACATTTC CTATAATAGC 001840 001841 ATAGTACTGT TTGCATGTAA GAGTATGCAA AACCTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT CTTAGTGTGT 001920 001921 GTAAGGCATG GCAGCCAACT TTGTATCTGC TATTTTTAGT ACGAGCAGAG CTTCATAATT GTGGTCACTA GAACTGTACT 002000 002001 TACCATGGAC AGTTAAAACT GAAAAAGACT CAATAAAACT ATGAAACATG GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002080 002081 AAAAAAAAAA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT092772_smProtein_752:889 |
Length | 46 |
Molecular weight | 5340.3693 |
Aromaticity | 0.177777777778 |
Instability index | 55.8513333333 |
Isoelectric point | 8.55242919922 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.00639715345598 |
Amino acid sequence | MILMCQTGVFYKIYNAYINKSCILQCFSNISVLEYLSLHIFWSKI |
Secondary structure | LEEEELLLHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii |