NONHSAT092772

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT092772

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2106 nt

Genomic location

chr3+:152557179..152559228

Exon number

1

Exons

152557179..152559228

Genome context

Sequence
000001 TGATGATTGA AGTATGTTTA TTGTAAGGGC AGAAATGTGT TGGCATTTGG ATAAAAAACT GCTAACATTA TAGAACTTAT 000080
000081 TACCTAACAA AATTTCACAC CACAAAAAAT ATTTTAATGG CAAATTCAAG GTGTTTTATT GCTTACAAAT CAGCATCTTT 000160
000161 GACTCTTTGA ACATCAATTT GTGTTTACAT TGAAATGACA AAAAGACAAA CTAAGAAGAA ATACAGCATG CAAGTTGGAA 000240
000241 TTCAGAGTTA AAACCATGAT GTTGCCGCTC AGCCAGCTAT GTGACTGTTG ACCCTTTCAA GAACACACAT GGATTTAAAA 000320
000321 GTTGGATGAC ATCCATTGTT GGGGCCTTGG GGGATATGGT AAAGCATGAA AACTAAACAG CCAGGAGCCT GTGAAATCTG 000400
000401 CTACTGTATT TTCCAGGACT TCATTCCACT CCTTGGCTAA AAAAATCTTG GAAGTTTCAC AGATTATGAT GTGGACCTGT 000480
000481 CACCTGTAAA TTGTCTCAAT CTACTCAGAC AAGACACTAA ACTGTCTTTG GATACTATAG ATGTCAGTGC TTATAGCAGC 000560
000561 TGGAATTTGG CTAGTGACAA TGTTTAAAGA TGTAATACTA GTTAGTATCT ATTGAAGCTT AAACTTTGCT GGTCAGGTTG 000640
000641 TAGCTATTGT AAAAGTATTT ATTGAAGAAG CTCACAGTCC TTCAGTTGTA CAGACTGAAA AACTTTCATG AAAGATCCAA 000720
000721 CATACTAATG TAAATTATAT TTATTACAAT GTATGATATT AATGTGTCAA ACTGGTGTAT TTTACAAAAT ATATAATGCA 000800
000801 TACATAAATA AGAGTTGTAT ATTACAGTGC TTTTCAAATA TCAGTGTCTT GGAATATTTA AGTCTTCACA TTTTTTGGTC 000880
000881 TAAAATATGA AAATGTTTCA TGATACAAGT GATTAATTTT CCCTAGTAGT GCTTTTGCAT GTTTGCCTTT TTATTTAAGT 000960
000961 TTTTTTCTAT ATAGACACAA TTTGGTGTCA GACTATCATA AGATCGATAG TGAATATAAA ATATCTTAGC CAAATGGGGT 001040
001041 CTGTATTGTC TACATTTTAT ATATTAAATA AAAGTTTTTG TTGTCTTTTC AGGAGGTTTA GAGTATTGTC ACTAAATATG 001120
001121 ATCAAAGCTT CCCTTTCCAA ATGCAAAAGT CTTGTCCTAC ATTTAAAGTT GATCTGTCAT GTTTTAGCAG TCAAGTGGGA 001200
001201 TGGGCATTAT ATAAACAACG TTACAATGTA AGGAAAATCT TTAAGGAGAT GGGGAGAGAA AAAGGCAGCT GGTATAATCG 001280
001281 GTTACTGCTG CTTAGTTCTA CTTAATTTTT TGTGTTGCTT CTTCTTAAGG TGAGATAGCA TAATCTTAAC TGTTTTGAGA 001360
001361 TGGAATTTTA AAGTAACACA CTACCAGCGA GTTCAACACT GCTATTGATT TTAATCTGTT TTTTTTTTGT TTAGTTGATA 001440
001441 ACTTAAATTC CAAGTTTCAT AGTGATAATT GTATATTATT TGGCTGCTGA ATTCTGTTAG AGTTTTTTAT TCTGTTGTAC 001520
001521 ATTGTATTAT ACACATAATC ACAAATTAAT ATGAAGGTGA ATATATGTTA CATATCAAAA TTTGTGAATT TGAATTATAG 001600
001601 TATGTTTTAG TGCTATTGCA AAAAATGTTT ATTTTTATAT TATCTGTGAT TTTAATATAG ATGATTGAAC TAGATTTCTT 001680
001681 TTTGAGTGAT AGTGCCATTG AATGAGCAGT ATGGAAACAG TGTTACTTGA TATTTTGAGC TTTCTCAGGT TTATCTAAAT 001760
001761 CAGTGGTAGC TTAACAAAAC CCAGACTAAT TGTGTGTAAT TGTATTTTTA ATAAAAGGAA AGTACATTTC CTATAATAGC 001840
001841 ATAGTACTGT TTGCATGTAA GAGTATGCAA AACCTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT CTTAGTGTGT 001920
001921 GTAAGGCATG GCAGCCAACT TTGTATCTGC TATTTTTAGT ACGAGCAGAG CTTCATAATT GTGGTCACTA GAACTGTACT 002000
002001 TACCATGGAC AGTTAAAACT GAAAAAGACT CAATAAAACT ATGAAACATG GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002080
002081 AAAAAAAAAA AAAAAAAAAA AAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT092772_smProtein_752:889
Length 46
Molecular weight 5340.3693
Aromaticity 0.177777777778
Instability index 55.8513333333
Isoelectric point 8.55242919922
Runs 7
Runs residual 0.00669191919192
Runs probability 0.00639715345598
Amino acid sequence MILMCQTGVFYKIYNAYINKSCILQCFSNISVLEYLSLHIFWSKI
Secondary structure LEEEELLLHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii