NONHSAT092861
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092861 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2520 nt |
Genomic location |
chr3-:156390960..156393502 |
Exon number |
1 |
Exons |
156390960..156393502 |
Genome context |
|
Sequence |
000001 GCTGAGCCCG GGTCCGAGTG ACGCGTCCTG TTGGCCGCGG CGGTTTGCTC AGCTCCTGGT CCCGGGCCGC GCCAACTCCG 000080
000081 CGCAGTGCAG CTGAGGCGCC GCCCGGCTCT GCAATTCCGG GTGTTCCCGG GCGTCCCCGC CCCCGCCTTC CCCTCAGCAG 000160 000161 GCGCCTGGGC GCCCCCCAAC TCCTGTCCAG CCTCCTTCGG ACCAACGACC CGCCCCGGCC TCCCTGCATC CCAGAGACTA 000240 000241 CTCGCGGCGC CTTCTCTCTC TAATTCTTCT TTACCCCCTC AGCTCACCTC CCGAGGAGCG TCCAACGGGT CTTGGGGGCT 000320 000321 CGCAGAACTG AGCCGCGAAG CGCGGGGGAA AGGCGGCGAG CGCTTCCCGC GGCGGCGGGG AGGAAGACGA AGACTTGTGC 000400 000401 GCTCTCAAAG TTAATGTGAA AACATCTTCC AAACTTCTGG GCTGCAGCCC GAAACGCGGG GTAGCCGGAA GGCTCCCGTA 000480 000481 GCTGCCGTGC CCTCCCCCCC CGGGGTCTGG GAAGGGCTCC TAGGCGCCTC AGAGCACCCG GGGTCGGCCC GCGGGGGAGG 000560 000561 CCGCATAGAC GCGCCCCCAC CCTGACGAAC GGGGAAGGGG CAGGCGCCTG CGACCCCAAC TAAATCCTTC GGCGCCTCGG 000640 000641 TCTGATGTAT ACACCTGCCA CAGGCTCTAA GTGCCTAAGA AGTGTAAACC AATTCCATCT TCATGCTGAC GGGACCCGAG 000720 000721 TGAATTCGGT ACAAAGGGCA GTCTCAAAAT CAATCACCCC GATCCGCGAG AGCCCCGCAC ACTGCCGGCG CGGGGCCGGG 000800 000801 GCCGGGGCCG GAGCCGCGAG GCCGGCGCTC GCACTCCCCG CTAGGGTTCT TCAGCCCCTC AGTGCCCTCC CGGAGCCCTT 000880 000881 TACCTGAACG GGAGCCTGAG AGAACGGACG ACAGGAGCCG AGTGGAAAGC AGTGCCCGCG CCGGAGATCA GCGCCGAGGG 000960 000961 CGGGAGCCGA CGTCTAGGGA CCACAGAGCC GCGACGCGGC GAGCCGCGCA CGGGCCATTC CGCCGCCGCG AACGCAGAAA 001040 001041 GCCTCGACCG CGCTCCGAGT CCAGCCAGCT CGCCTGTCAC CTCGATCTCT GCTTTAAGTG GCTTCCGGTC GCCTCCTCCC 001120 001121 GACGGCCCGT CGCGGAGGCG GAGCCTGGGC GGCCGGAGTT CGGTGGGGTG GGGTGAGGAG GCCGGGCGCT CAGTGGGTGT 001200 001201 CGGGAAGAAG ACCCGCCCCC TGCGCGCGCG TGCGCGTTCG TTCGAGGGGA GGCGCGCGAG TTCTGTGCGG TGGACTTGTG 001280 001281 CTCCCGCGAG GGGGCGTGTC CTTTCTCGCG TCCGCAGTGT CCCTGAGGGT CCGCGTCTAC ACGCGGCTGT GAGGAAGGAA 001360 001361 GGCGCGTGCC GCGTGGGACG GGCTCCACCT GCCTGCGGAC AGATGGAGGG TCACTTTGTT CCGAGAAGAC CCAGACACCC 001440 001441 GAGGGAGGAT GTGAAACGGA ACGACCCGTT TCGGTGCGGT TGGCTTTGTT TATTTGCCTA CTCCCCAGAC GCCTCCAGCC 001520 001521 TCTGATTCCG GCACACCCTG TGAGGAAGCA AACGGCTGCC TCCCCCACTG CCACCAGACG AGGTCGCCTG CCCCGAGCCG 001600 001601 GACAGGCTGG ACAGGCTGCG CACCTGCGGC GGCCGACTAT TTCGTGGGCC TTGTACGCCA CCTTGCAGAA GGGAAGCTGT 001680 001681 GAGGTTTTGG CGATAGAAGC GCATTTACTT GTGTTTTAAA GCCCACAAAC GCCGTAGTGG CTAACTTATT CATTCAGCAA 001760 001761 ATGTCTGTCA GAGCGTCTAT TACGTACCAG GCATGTAGCC TGAACTTCAT GCCTGTCCTC ATGGAGCTTG CAGAGCACCT 001840 001841 CTGAAATACA CACCACATAC GGAATGGCCA TATTTTCTGG GTTGTAAAAT ACTTTGAATT GTAACTCCAT ATATTGAATA 001920 001921 GATTTTCAGT GGTGAGGGAA GAAACAATAC ATTTAGTTCA TATAATCCAT ATGTACGAAA AAGAAGTGCT GGTAATTCCA 002000 002001 GACATGGAAG TCAGTAAAAC TAGGAGCTAA GAGGTAATAA TCATAGACAT TATGATTCTA AGCCTTTGTT AAACGGTTCT 002080 002081 AAACCAGACT GGGTAAGCGC ACCAGCAATG AATAGATTAA GGGTGTTATC TCCTTAGCAG CTTATTTCAA ATTGCATCAA 002160 002161 GGCAGGGCCA TTAAACTAAG GTGAGAATGA TATGGGCGGA ATTCAGAGGA CAATAGGTAA AAGATGAAAA TCTTTACATT 002240 002241 TAAAATCTTA TTGAGACAAG ATCTTGGTCC GTGTCTACTC ATACATAGAA TTGCCTAGAA GCTAATATTT GAGTTTACCA 002320 002321 TATTACTGTT GGCTTTCTAT TTTTCTCATT TGTTCTGTTT CTTTTCTGTC CTTTTGTGCC TTCTTGTAGA TTATTAATTC 002400 002401 CACTCCCTTG TAACAATTAG GTTGTTATAC ATTCTTTATG CTTTTAGTAG TATTTCAGTT ATTTATTGCT GTGTTCAAAC 002480 002481 CACCCCCAAA ATATAATGAC TTAAAACAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT092861_smProtein_644:886 |
Length | 81 |
Molecular weight | 8388.5503 |
Aromaticity | 0.0375 |
Instability index | 56.0275 |
Isoelectric point | 11.2363891602 |
Runs | 14 |
Runs residual | 0.0361842105263 |
Runs probability | 0.0329699447347 |
Amino acid sequence | MYTPATGSKCLRSVNQFHLHADGTRVNSVQRAVSKSITPIRESPAHCRRGAGAGAGAARP ALALPARVLQPLSALPEPFT |
Secondary structure | LLLLLLLLHHHHHHLLEEELLLLLEEHHHHHHHHLLLLLLLLLLHHHLLLLLLLLLLLLH HHLLLHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |