NONHSAT092970
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092970 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1909 nt |
Genomic location |
chr3+:159706648..159713806 |
Exon number |
4 |
Exons |
159706648..159706961,159707954..159708099,159710799..159711631,159713191..159713806 |
Genome context |
|
Sequence |
000001 GGAGGCGGCG GGGCCGTCCC GGAACGGCTG CGGCCGGGCA CCCCGGGAGT TAATCCGAAA GCGCCGCAAG CCCCGCGGGC 000080
000081 CGGCCGCACC GCACGTGTCA CCGAGAAGCT GATGTAGAGA GAGACACAGA AGGAGACAGA AAGCAAGAGA CCAGAGTCCC 000160 000161 GGGAAAGTCC TGCCGCGCCT CGGGACAATT ATAAAAATGT GGCCCCCTGG GTCAGCCTCC CAGCCACCGC CCTCACCTGC 000240 000241 CGCGGCCACA GGTCTGCATC CAGCGGCTCG CCCTGTGTCC CTGCAGTGCC GGCTCAGCAT GTGTCCAGCG CGCAGCCTCC 000320 000321 TCCTTGTGGC TACCCTGGTC CTCCTGGACC ACCTCAGTTT GGCCAGAAAC CTCCCCGTGG CCACTCCAGA CCCAGGAATG 000400 000401 TTCCCATGCC TTCACCACTC CCAAAACCTG CTGAGGGCCG TCAGCAACAT GCTCCAGAAG GCCAGACAAA CTCTAGAATT 000480 000481 TTACCCTTGC ACTTCTGAAG AGATTGATCA TGAAGATATC ACAAAAGATA AAACCAGCAC AGTGGAGGCC TGTTTACCAT 000560 000561 TGGAATTAAC CAAGGTATAA AGGATTTTCC TCCCAGAGCA TGCAGTGTGG TTAAAAACTG TGCATCAAAT CTCACCTGCT 000640 000641 TCTAAAAATT CACGTTTCTG GTATCCATCA TTATGGGATT TTAACTGGTC CTACTTcaga agttagattt gggagaaaaa 000720 000721 ttatttttaa aaaatggttt tttttgcaac aatgtgaata cacttaacac ttaaaaatag ttcagatgct aaatattatg 000800 000801 atatgtgttt ttaccataat aaaaaaaaTT TGAGACCTGA AGAGTCAGAA AGATTTATAC TAAGAATTAA TACTTTGATA 000880 000881 TATGATTTTT TCCCTCTAGA ATGAGAGTTG CCTAAATTCC AGAGAGACCT CTTTCATAAC TGTAAGTCAA AAAATGAAAA 000960 000961 GTTTCAGCCT GTATGATGAA TTCATATCAC TGATGTCTGA TTATTTTTTC CTCTAGAATG GGAGTTGCCT GGCCTCCAGA 001040 001041 AAGACCTCTT TTATGATGGT AAGACACACA GCTCTTTCCT CAAATGCAAT GGGGGAAATG TTTTTAGCCC ATCTCAATGG 001120 001121 ATACTTCCCC ATCTTGTCAT GTCACCCAGG CCCTGTGCCT TAGTAGTATT TATGAAGACT TGAAGATGTA CCAGGTGGAG 001200 001201 TTCAAGACCA TGAATGCAAA GCTTCTGATG GATCCTAAGA GGCAGATCTT TCTAGATCAA AACATGCTGG CAGTTATTGA 001280 001281 TGAGCTGATG CAGGCCCTGA ATTTCAACAG TGAGACTGTG CCACAAAAAT CCTCCCTTGA AGAACCGGAT TTTTATAAAA 001360 001361 CTAAAATCAA GCTCTGCATA CTTCTTCATG CTTTCAGAAT TCGGGCAGTG ACTATTGATA GAGTGATGAG CTATCTGAAT 001440 001441 GCTTCCTAAA AAGCGAGGTC CCTCCAAACC GTTGTCATTT TTATAAAACT TTGAAATGAG GAAACTTTGA TAGGATGTGG 001520 001521 ATTAAGAACT AGGGAGGGGG AAAGAAGGAT GGGACTATTA CATCCACATG ATACCTCTGA TCAAGTATTT TTGACATTTA 001600 001601 CTGTGGATAA ATTGTTTTTA AGTTTTCATG AATGAATTGC TAAGAAGGGA AAATATCCAT CCTGAAGGTG TTTTTCATTC 001680 001681 ACTTTAATAG AAGGGCAAAT ATTTATAAGC TATTTCTGTA CCAAAGTGTT TGTGGAAACA AACATGTAAG CATAACttat 001760 001761 tttaaaatat ttatttatat aaCTTGGTAA TCATGAAAGC ATCTGAGCTA ACttatattt atttatgtta tatttattaa 001840 001841 attatttatC AAGTGTATTT GAAAAATATT TTTAAGTGTT CTAAAAATAA AAGTATTGAA TTAAAGTGA |
Predicted Small Protein
Name | NONHSAT092970_smProtein_1052:1162 |
Length | 37 |
Molecular weight | 3927.62 |
Aromaticity | 0.0833333333333 |
Instability index | 45.2527777778 |
Isoelectric point | 6.80413818359 |
Runs | 7 |
Runs residual | 0.013986013986 |
Runs probability | 0.0247937012643 |
Amino acid sequence | MMVRHTALSSNAMGEMFLAHLNGYFPILSCHPGPVP |
Secondary structure | LLEEELLLLHHHHHHHHHHHHHLLLLEELLLLLLLL |
PRMN | - |
PiMo | - |