NONHSAT093003
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093003 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1728 nt |
Genomic location |
chr3-:160471216..160472930 |
Exon number |
1 |
Exons |
160471216..160472930 |
Genome context |
|
Sequence |
000001 GGCTTGCAAA GCGGTAGGGA GACGATCGGG CCGCTGGCCG CTGTCTCGGC GTTCAGCAAT AGAGGCCTTC CCGGATCTCC 000080
000081 CGAGAGGCGG GGAGCGAGCC TGGGTCCAGC AGCCTTCTCC CTCCCGAGAA CAGCAGAAAG GGGGGACTCG ACAGAATGAC 000160 000161 CTCTGTTTCC CCAAGGAAGT GCACTCTGAC GATAACCTCG GGAGGGACGA GAAGGGCCGC TCTTTCGGAG AGCGGCCGCC 000240 000241 GCCCCTGGAG TAGGGGACTC AGTGGCCACG AAGGCCTTCC CTGCTCGCGA CCTTTCCACG GGAAGGCACG AAGCTTCCGA 000320 000321 TGGGGGCCCC GGGGCGCTCC TGACTTTTCT ACGGCGCGAG GGCTCTGACT CTGCGGTTCA GGTTTGAAAG TCCTTTGGAA 000400 000401 GCTCGCAAGT GGTGGTCTCC CACCACCTGC TCGGTCATAG CAGGAAGAAG GCGCAGTGAG GGCGGGAGTC TGGATGAGCG 000480 000481 GAGAGTAGCC ACCGCGGAGA AGAGTGCGGG CTTGCAGGAG CCAACGAAGA TAACTCGAAA TGTGGGCAGG CAGGTGTTGG 000560 000561 TGGGTCTTGA AAGTGGGAAA GCACGAGAAA AGAACAATGT TCGCGTCCGC TTAGAATACG GAAACAAGTG AGCTTTAAAG 000640 000641 GAAAATACTC ATTCTCATTA CCCCTGTCCA GGAAGAAGAG TGCTGATCTG CTGCTTCCAG TCCGCTGGGC TGGAGAGCAG 000720 000721 AAAGAGGCTA CTTGATCCCA GCCAAGCCAG TGTCTGTCCC CCAGCGAGCA CTTCTGCCTT GGTGTGATCC CCATTCCTTT 000800 000801 TCTAAAAATA CAAAATAATA AGAAGTCCTG GAAGGAAATA CACTAAAATG TTCCCAGTGG TTAATCATGC GTACTGTAGT 000880 000881 AGATTATATG CAGCTTTCAT TTTCTGCTTT AGACTTTTGT CTATTTTCCA CAACTTTTCT AAAGTTTCTA CAAAGGCCAT 000960 000961 ATATTTCCAC CATAAGCAGA AAAAATGAAA ACGTAAGCAT TTAAATGGCA CATACAATAT AATCTCAATA GTATAAACAT 001040 001041 GCATACAAAA GACAGGAAGG AGATATGAAG AACTGCTAAC AGTATGTTAT TTTTCACAAC TAGGATATAG TCTCCTGTCC 001120 001121 TGCTTTACCT TTCAGGTATT TTCATCTGAT AAATAGAGAA ACAGTTTAAA ATAAATTCAG TCATCCTGTT CAATAGCCAA 001200 001201 GAGGTTCCAA AATGAGATAA TGAATTTAAA AGCCTTCGGG AACTATAAAG AAAAGTAATG CATTAGTATT ATTTTGAAGA 001280 001281 TAAGTTTACA ATATTTCTTA CTGTAAATTA TCAAATCACT TTTGGGTGCA TTGTCAGTCT TTCTGTACAT GGATTCGTTT 001360 001361 CACTGTGGCA AAGGCAACTT GCAGATAAGC TGATAAAGAT TCCAGAACTA CAAATCAAAC TAGGCCCTGG AGTAGCAGTA 001440 001441 AAATTCCAAA CCCAAAGGCC CATCCAGTCT GTCCACTACA TTCCTATATT GATGAGAGCA GAACAGACAC TCATGAGAGA 001520 001521 CATGACTTCT GCTTCCCCCA TAACTAAGAA GAGAGATTAC CATACTGATG ATCTCCCTGG AGGTTTCATA GCAAGGTTTG 001600 001601 ACTTGATGAA TTAATTAATA AAGCTAAATA TCCTGAAGAT TTGGTGGAAA TATGCTTTGA CATTTACATC TAAGTGTTCA 001680 001681 TCCGTGAAAA TCAATAAAAT ATTTTTTCAT GCAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT093003_smProtein_155:367 |
Length | 71 |
Molecular weight | 7555.4863 |
Aromaticity | 0.0714285714286 |
Instability index | 61.6942857143 |
Isoelectric point | 11.924987793 |
Runs | 8 |
Runs residual | 0.0305516265912 |
Runs probability | 0.0349982335276 |
Amino acid sequence | MTSVSPRKCTLTITSGGTRRAALSESGRRPWSRGLSGHEGLPCSRPFHGKARSFRWGPRG APDFSTARGL |
Secondary structure | LLLLLLLEEEEEELLLLEEEHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLL LLLLLLLLLL |
PRMN | - |
PiMo | - |