NONHSAT093112
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093112 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2676 nt |
Genomic location |
chr3+:167613736..167641797 |
Exon number |
8 |
Exons |
167613736..167613872,167621094..167621238,167623651..167623843,167630574..167630692,167632849..167632991,167638353..167638579,167639732..167639824,167640177..167641797 |
Genome context |
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Sequence |
000001 AGACCCCCAA AAGAGGCTGC AGATTCTTAG TGGACAGCTC TCATATCCCC TCCAGGGAAA ATGATGAAAA ATGTCTTCAG 000080
000081 AAAAATAGCT TTATGAAGGC AAGAGGACTT TTTGCACCTG CAAGACATGT CTGAAAGCTC CTCAGGTCAA AACACAAGTA 000160 000161 GTCAAGAGAT TTGTCCATCT AATTCATCAT ACTACTCTGA TCCAAGTGAG ACCCACACTG GGTCAGCTCC ATCAAGGAGA 000240 000241 AGAACATTCC ACCCACGTTT GGATTCTGGA ATATCATCCT TGCTTCCATC AGATTCTTGT AAGTACCTCA CTTGGCACAA 000320 000321 GGTAGACATG ACGTTCAAGG AAGTCAACTG CGTTGCCCAA GAGTAAGAGA AGGTAAAAGA ATAAATGTGT GCCTTTTTCG 000400 000401 TGTACATCCT CTGAATAGAA TTTTTTGTGG ATTAAAAGAC ATTACTTGAA GAAAAAAAAA AGACACCATT TGGAGGAATC 000480 000481 TCTGAAGAAG AGCAACTTTT CAGACAGGTA GAGTGTGCCT TGCTCCCAAG GAAAAGAGTT CTTGAAAAAA ACAAATGGGA 000560 000561 AACATGGCTA CAAGAAAACT GGGAAGACTG CAAGAATTTG AACATTTCAT TTCAGGGTTT GGGGGATCCT TACCAAGTTG 000640 000641 AAAATTTTAA CAGAATTCTT AGAAGACTAA TTCGAGTTGA AACCCTCTGG TTAGTGGATA ATTCACTGGT GGACTTAAGT 000720 000721 GCCATAAGAT TGCCAAGAGT ATTCTCCTGT TTGCCAAACT TAAAAATGCT GGATGGAATC TTGAAGCTAC CAGAAGATTG 000800 000801 CTTATCACCA GAAACCAATA TTTTTTCAAA AATATGCCTT GTATCCTAAT GCAGTCTGTA TAGAAAGAAA GCAATCATCA 000880 000881 TTGTTGCTAA AAGCTAATAA ACACAGGACA TGCATGATTA AATATTGCAG TTTATTTTAT ATCTTTTTGC TTTTCTAAAT 000960 000961 CAAGGCAAAA ACATGCTAAC TGACAAGAAA ATCATGGGTT TTATACAAGG ATAACAAGTG CTGGGTTGCT TAGCTATGAG 001040 001041 GAAGGCTAGG CTCACTGCAT ACCAGAAGAT GTACAGCGTT GGAGAATTCA GGGATTTTTA TCAACAATCA AACTATATTT 001120 001121 GTGGAAATTT TGTGCATAAG TGCCAAAGAT GGCTGACATC GGACCACATT CTATTTAACT CAACTGAATG ACACCAAGCT 001200 001201 CTCATCCTAA AACTTATAGT TACATCCACC CTTCTGAAAT ATTTAATTAT TCTCCAATAC ACTGGAGGTA ATAGGTATAA 001280 001281 AAAGAATGAG CATGTGCAAC TTAGTATCTC ATATCTAATT TTGTGTCCCA AGTTCATTCT TCCCCTGAAT GTCCCATGTC 001360 001361 TACCAGGTGC AGGATTATCT GGATGGGTCA GTTCAAAACA ATTTCAGGGA ATAAATTGTG TAGGGGACTC AATTTTCTGA 001440 001441 GACAGAAACA TAATGTGAAT AACTCCTTTG TTAGAAAATA ATTTCAGTGA CAGAAAGCCT TTCAGTTCAT AAAGAAAACT 001520 001521 TACATATCAA CAAGCCTAGC TCCTCACTAG TCCCAGTGAA TGCTTACATC AATCAGCTCT ACAATATCCA GTAAAGGACT 001600 001601 TTCCAATTCG CCTTTGAATA AACTGAGGTA TTGGAAACAT CTAAGAAAAT GGTTTTTAAT TCTTCCTAAT CTTCAGGGAG 001680 001681 TTCTTCCTTA TATTGAGCTG ATATCTGCCC TCTGTAACTT TCAACTAATT ATTCAAATCT CTCAAGTGAT TATAATTAAT 001760 001761 TCCATCTTAT AAGGAATTTT TCTCAGCTTC CAGCCTCTTG AAAATACTCT GATATTTTCT CTAATATTCA AGTGGAAATG 001840 001841 TAAATGGGTA ACGTAAGAGT CTGTGGGGTT AGGAGGGTGG AGGAAAGGTA AGGGAAAGCT AATGAGAAAT AACCAAAGCA 001920 001921 AGAAAAAGAA TTTTATTTTC TTCAAGTTCT TTGTACATCC AAAGTGGAAG ATTCCTAAAA TAAATTCCCC ATACCACATT 002000 002001 TTAAAAATTA GGTTAGCAAG CTTACTTTTT AATTTATTTA GAAGCCAACT ACTTCCATTT ATTATTTCTT TCCAGAATAG 002080 002081 AACAATTATC ACTAATTGTT TGTCATTATA ATGCCAAACT ATGTTAATAG ATGCCTATTT TTTTAAAGGC TAATTGCAAT 002160 002161 CATGAAACCA AATATCTAAT TAGTTTTAGA GCTTTGGACC ACATGCATCA ATATTTGAAT CATTCAGGTG TATATTTGCT 002240 002241 TTCTGCTTTT TTGTCTCTTC AAAAGAAGTA TTATATGCAT TCTGTTTATA ATTTCTAAAT GGTCATTTCA AAACTGATTA 002320 002321 TACGAGTTTA TACAAATCAT ACTGAAATTT GTTGCTTAAA AAATCTTCAT TTTTCTCTAA GCTCTCAGTG TCCTTGAGCT 002400 002401 ATATATATTT TATGGCAATT TTTACTTAAT AGTTTGTATG CTAGTTATTT TTGACAATGA CTACTAAAAT GCAAGTTTCT 002480 002481 TCAAGGGCAG ATTCACCTTA GTTCTTCTTT ATACCCCTCA AAAACCTCAG GGTTATTCTC AATAAGTATT GAGTAGGTGA 002560 002561 GTGAACTTTG GATGTATACT CCTTGAAATT ATATTTCTGG AGCTGGAAAA CTTTAAAAAA ATGTATGTCA TGAGTCTAAA 002640 002641 GAAATAAACA TTATATGGCT GAAAAAATAC TTTGTG |
Predicted Small Protein
Name | NONHSAT093112_smProtein_1559:1771 |
Length | 71 |
Molecular weight | 7996.5206 |
Aromaticity | 0.0857142857143 |
Instability index | 47.0057142857 |
Isoelectric point | 10.0195922852 |
Runs | 10 |
Runs residual | 0.0019801980198 |
Runs probability | 0.0149620208444 |
Amino acid sequence | MLTSISSTISSKGLSNSPLNKLRYWKHLRKWFLILPNLQGVLPYIELISALCNFQLIIQI SQVIIINSIL |
Secondary structure | LLLEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHLLHHHLLHHHHHHHHHHHHHHHHHHH HHHEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHH HHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTT TTTooooooo |