NONHSAT093159

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT093159

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1277 nt

Genomic location

chr3+:169512750..169514001

Exon number

1

Exons

169512750..169514001

Genome context

Sequence
000001 CCAGCGTCCG CTCTATGTTT TATTACTCTT TTTAGTGGTG GAATTTTTGT TAGTCCTTTT GCAAATTTTG AGAATTTTAA 000080
000081 CATCTACTTT TTCCCCCTCG TTCTTTCCAA ATGAAAACTG TTACCATTAT TTCTGTTTTG AAAGTAGTAT CAAAGGCTGT 000160
000161 CTGTATTTAT GTGAGCAACA TGCCAAATAT TTTGATAGCT TGTACTCTAT CTCTCCCATT CCATATTTTG GTATAATTAT 000240
000241 TAGGGAGCAG ATCAGAAATT TTGCTACATC TGATCAATAA TTATGATTTT TCTTAACCTT AGAGGAATTA GAACTGTGTC 000320
000321 ATTCAGTGAT GTGTAATACT AATACATAGT TTTAATATCT TTGGTTATTT GAACCACCAA ACTCTCTAGT AGTTAATTTT 000400
000401 AAGACTTATG TTAATTATCA AAACTGCAGT GTCTCACTGT GTAACCATTT CTGAGGCACC TGTAAATAAT ATCTGATGTT 000480
000481 ACAGAGATGA TCCCAGAAAA AGCCTTCAGT GAAGGAAAAA ACTTAAAACT TACTATACAC GTAGCCTCAT CAAATTTGTT 000560
000561 TCCCCAAATG TAGATATGAG AGAAAGTGAG ATTTGTTTTC ATTGATTGTG AAAGTGCAAC AAGTCCTTCT CCCTCTATGT 000640
000641 TGTTGCTGAC TACTGACAAC CTGAAACCAA TAATTCCACA AGGAAAGAAT ACAAAAATTA GCAACATTTA TTACAAACAC 000720
000721 TTTCTTGTGT AGTCTTAGCA TTATTCTTCA GTATGTTGTA ATGTAGTGGT AAAAATACTG ACCATTTAAT TCCTAAAATC 000800
000801 CAAGAAACTT AGTTTTCTAA TTAGATCCTT AAGGTACTTA GTAGAGCTAA CTACATTTTG AAAGTCTTCT GTTTTATATT 000880
000881 ATTCAGTAAA TGTTTGGGTG GATAGCAGAT ATATTTTTCT GGATAAATGC ATCCAAGTAT TTTATTCTTT AGTTCATTCT 000960
000961 TACTTTTAAG TCTTGATCAT ATTGAATGCT TCTGAGTTTT CTATTAGAAT TCAGGATAAG TAATATAAGC AATGCAAATT 001040
001041 TTCTCATTAA TTTGAAGGAA TCGTTAATAG AATCAGTCTA ATTGTAAAAG ACATTACATT TGAAAAATAG AAATGTAAAT 001120
001121 GTTTACTGTA ACTTAATACT ATGTCAGTTT AGAAGCTGAG TTTTCATATT TCATTATAAT CTTAAGAGTT AAGGGGATTG 001200
001201 AGGTTAGTAT TTAAAAATTT GCTTTTCTGT TATTTTGATT AAATATAAAA CCATACTAAC AAAAAAAAAA AAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT093159_smProtein_110:235
Length 42
Molecular weight 4473.5592
Aromaticity 0.0487804878049
Instability index 73.1536585366
Isoelectric point 9.30340576172
Runs 11
Runs residual 0.0923238066736
Runs probability 0.0480319892085
Amino acid sequence MKTVTIISVLKVVSKAVCIYVSNMPNILIACTLSLPFHILV
Secondary structure LLEEEEEEELLEELLEEEEEEELLHHHHHHHHLLLLLEEEL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTToooo