NONHSAT093444
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093444 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2871 nt |
Genomic location |
chr3-:180425377..180587966 |
Exon number |
14 |
Exons |
180425377..180426692,180428981..180429007,180429098..180429170,180443303..180443361,180451267..180451470,180452275..180452394,180455281..180455602,180465668..180465831,180466034..180466107,180469136..180469198,180499772..180499912,180528198..180528258,180565295..180565412,180587835..180587966 |
Genome context |
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Sequence |
000001 ACGCTCTGCC GCCAGGAGTG GCAGGAGGCG AGCTGAGTGA AATGAGCTGC TCCAGTTCCC GCCCACGAAG GGGGTTAAGA 000080
000081 TGAAGGGAAC AATCCTGTCT CATCTGGGGG CCTGTCCAGG ATATGAAAAA CAAGTATCAC TCCATCACCC AGGCTGGAGC 000160 000161 ACAGTGGTGC AACCTCAGCT CACTGCAAGC TCTGCCTCCT GGGTTCGAGT GATTCATGTG CCTCAGCCTC CCAAGAAGCT 000240 000241 GGAATTACAG ACTCTACCCA ACAACAGCAG AATACACATT TTCTTCAGGT TGACCAAGAG CATTAACCAA GAGTAATCAA 000320 000321 AAAGAGGAGC CGACTAGACA CAGCCAGGAA GAGCTTCTCC CACCGGAAGA CCAGACCAGC AAGAAAGTTG GCACCCTCCA 000400 000401 AGCAGGTTGT TGAAAGGAAG GCCTTGAATG TGGACAGAGG ACGATGCAGA TGAGGAAAGA CTAGAAGGTT CTGTACCTGT 000480 000481 TAACAGTGGC TGATCCTAGA AGAGTGAAAT TTAGGCAGGT AGTTGGAAAG AACACAGCAC AGAAAACTTT AGGATGAATT 000560 000561 TTCCTAGCAG CCATTCTGTA TCGTCAAAGC CTTCAATCCC TGAGGAGAGA GTTAATGGCA CACAGGAGTG GGGTGATTTG 000640 000641 GGCAATGAGT GCTTCTTCCT TTCAACCTGT TGCTGCCTAA CACAAGGACA ATTGGTCTTC CACCCTCTTC ACAGTTCATT 000720 000721 CAGTCATTGT CCCTGTCTCC CAGGTGAGTT GAGTGAAAAT AATGGTGACA AGAAGCCCAC TGCCTGATTC ACATAAGCAA 000800 000801 GGCATGCTGC AGGGAAGACA GGGTTCTTAT TAATATTTCC TTTCATGTGC TTACATATGA GTTACAGTTG CTAATCCTTT 000880 000881 CCCACAGTTT AGCACCTAGT TAAAAGAAAG GGCTTCGGAA TCAGGTAAGT GTAGATTAAA GTTATAACGG CAAATTGCTG 000960 000961 AACCTTTGGA AGCCTCGGTT TTTCCACCTG GAAAATGGAT TTTTATCTTA CAGGACTGTC GTGAGGATTG ATGAGCTAAC 001040 001041 ATTCCTAAAT CAGGGAGTTT GAAGTCTGGC CCAGGATCGT CTAGATTTTG ACGTTCTCCT TGTCTTTGCT GTGTACCCCT 001120 001121 GGGAGAAACA AAGGGTGAGA AGAAACAAGG GAAAGGAGAA ACATTTGTGT TTTCCAACTT TTCAGTGTTG ATCAGCCAGC 001200 001201 GGGAATAAAG AGAAGATGTG TAAGATGGAG GGCAAAAGAG ATTCCCAGAA GCTGCTGCAG ATCTCTTCCA GTTGCATTTC 001280 001281 GAAAGCCATT ACTTAAGTGT ATATTCACAC CTAGCTGCAA GAAAGGCTGG GATTGTATTC TGTATTCTGG GCAGTGATGT 001360 001361 GTCCAGCTGA GCACTGGAGT TTTATTAATA AGGAAGAAGG TATTTTCCTC CTTTCCTGAA ATAATGTGTA GTTCTGACCA 001440 001441 AGTGAGAAGA ATCATAAGAA TATGGGATTT TGAAAAACAT GAAAACATCC TAAGAAATAC CAGGAAGGAG TCCCACAGTG 001520 001521 AAGCACAAAT GAAACTCAAG ATGACTGCCT AAAATAAGAA ATCATGGATC TTAGGAGAAA GGGGGCAAGG AAGTAAATCA 001600 001601 AAGGACAAAG CTGAAGACCA AGTGGACCGA AAAGAAGATG GAATACATTT TCCCAAACAC TGGTGTTCTC TGGAGTTGGC 001680 001681 TTATCAACAT CTTGTGTAAT AGTCATATAA TTGTCCCTCA TTTCTATCTC CTCCTAAAAC TAGAGAAATG GCCTATTAAT 001760 001761 TTTAGAAGGT GTATAATTAT CACAAAGCCC TCAGATTAAG GTCCAGGACA CAGAATGGAA TATATGAGCA CGCAGAAATG 001840 001841 TATACCTTTA GATTGAACTT GGATGATTTA CCTTTTGACT GTCACCACCA GCAAATCCTG AAATTGGATC TCTTGAAACT 001920 001921 TATGGTTTTC TTTCAGCAGC ATAGGAGTTA AGTTTTCTTC TAACTTGCCC TAGGTTCTCT CAGGAACTGG GAAAGCAGTT 002000 002001 CTCCCAAATC CCAAGTAAGG TATTCAAGAC AACATAAGGC AGAGCTAAAT TCTTCTGTTG AAGAATTTAA CATGACTCAA 002080 002081 ACCATAAGGA AATCTAAAGA AGGCTGCCAA ACTATTTCGC TGCTGCCCTC CCCCACCAAA AAAGAGATAA AAATGTTAGA 002160 002161 TTTACAAAGC AAACTACAGT GTATGGAATA TATATATCTA TATATAGAGA GATATATATA CACACACACA ATTTTTTTAA 002240 002241 CCTACCACTT TGTCTTATTT GCATGAGCAC AAATCGCTTT CAACTTAATG CCAGAGAAAA AGGCAACATT CCCCGTGATG 002320 002321 ACTTGCTGAA AAGCTCACTG TATTTGTTTG ATAATGGATT TTAGTTCATT GTCATGTACT TCACTCTTCA TCAGCAGGAG 002400 002401 CACTTCAGGG TAAAGAAACA GGCTTTTACC ACACTGGAAC AAAAGCTATA TAAGGAAAAA AAAATCCTGA GCAGATGGAA 002480 002481 TATTATTTGC ATTTGCACAA ATAGTGCTTT TTAGCACAAT TCATATTACT CCATTGTGAG CTAAAGTAAG CCACATGTGT 002560 002561 CTACAGCATG CTGCAGACGC AGAATCGGCT TTTTGTTTGT CAGACTCAGA GGTCCCAACC TTATGATATC TTTGTACTTG 002640 002641 TATATCCATT AGTTTTATTT CAGTTACTTA TCAGAAGGGA AAAGAAAAAA ATGGCACTAT GCAGTTAAGA GGACCATTGC 002720 002721 ATGGAGGGCT AAATTAACTA TTTTTTATTT TCATGAATGA GGATCAAATA GGTTTCAGAT GTCTCGACAT CTATCTGGAG 002800 002801 ATCTAGATGA TGATATAAAA TTAAAATGCA GAATGTAAGT GTAATAAAAT TTGTTTCTCC ATGATTACAT T |
Predicted Small Protein
Name | NONHSAT093444_smProtein_1637:1798 |
Length | 54 |
Molecular weight | 6400.6227 |
Aromaticity | 0.150943396226 |
Instability index | 50.4586792453 |
Isoelectric point | 8.76983642578 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0445837994857 |
Amino acid sequence | MEYIFPNTGVLWSWLINILCNSHIIVPHFYLLLKLEKWPINFRRCIIITKPSD |
Secondary structure | LEEEELLLLHHHHHHHHHHHHLLLLHHHHHHHHHHLLLLLLLLEEEEEEELLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii |