NONHSAT093687
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT093687 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
4916 nt |
Genomic location |
chr3-:183942735..183948316 |
Exon number |
2 |
Exons |
183942735..183947501,183948168..183948316 |
Genome context |
|
Sequence |
000001 GGCGCCGGGA GGCCGGCCCT GCGGGAACGG GCCGGGGAAG CTGGGCGCAG GGTGACGGGA CGCCCACCCC GCGCTCCAGA 000080
000081 GGCCAGCGCG AGAGTCTCAC TCCAGCACCC GGACGGGGCC TGCCGGGGCG CGAGGCCGAG CGGGAGCTCC GTCGCGCCCT 000160 000161 CCGCGGAGTT CTAGGTGCCC ACGGGATCCG TGTGGGTGGT GCCGCCTCTG CGCTCCGGGT GGCCCTCGGT CCCGGCACCT 000240 000241 GCCGGCCGCC AGTTCGTGAC TGTGGCTGCA GCGGCTCTGA GTCCCGGCAG GGGCGCGGGC CCTGCCGGCG GTGGTCCCGC 000320 000321 CCCCGTTCCG AGAGGCCGCC CCTCCAGCCT GCCCTGGCCA CGCCTGCTGC TGCTGCGGCG GGGCTGGCGC TCCCCCCTCC 000400 000401 TTCGGGCGCG GTACCGCCTC CGCGCCAGCC GCGGCAGCCC GAGCCAGACT GGGCACCGCA GTGCAGGGAC CGCGTCCCCG 000480 000481 CCGCCGCACG GATCCCCGTC ACTGCAGGAC CGAGGCCTCA GAGACCCCAC CCTTTCCATT CTTCAGGAAT CAGGCGTCCT 000560 000561 GCAAGTGCCA CCGACACTGC CGCGACCCCA GCTATCCCAT TACCACGACG GCATCCCATT CCCCAGCCCA CCCCACCCCC 000640 000641 TGCCCTGGGT TGCTTCCCAT CGCTGCAGAG ACCCTCCCTC CTGACTGCAG CGAACCCCCC AGCCCCCCAT CACCGTCACC 000720 000721 GCAGGACTCT TCCCCCAAGA AGCTGGCCCC TTTCCTTTGC AAAGTGCTCT TCATCACTGC AGAAAACCTC CCCCATCCCT 000800 000801 GCAGGTACTT TTAGTTCATG CAGCCACTTC AGTGACCACT CACTCCAAGC AGGGATTCCT CATCACTGCA GCGACCTCCT 000880 000881 CCCACCCCCA AGCAGCCGGC CTTGGCATCG CTGCAGTGCC AACCACTTCT GCTGGGGTGG GAGGGTGTGC ACAATAGCGC 000960 000961 CCTCAGCCTA TAACCCCTTG GTCTCTTCAG CTGTGCGGGC CTTGGGAGTG AAGCCTTCTA GCCTGAAGAG CCTTCTTATG 001040 001041 GCTGCAGACC GTCCCCTCAT AGCAGTGACC CCCACCCATC ACCGCAGCCC TGAAGAGAAA ACATCTCTGC TTGTCAGGAG 001120 001121 GGCCCCTTGT TATTGGCAGA CTTTGCATGT GCTTGACAGT GTTATGCTGT CAAAAAGTAG GAAGGTCCGG AAAACCTCTC 001200 001201 CCAGGTCCCC CAAGGAAGAG TCTGAGAGCC CTGGGGAAGT GAGAGGAGAT GACCATGTTT GGGGATCATC CATGTAAGCT 001280 001281 TTTTGGCAGA TGCCATACTG AGATTCTGCA GAGAGAGCTT GAGGAGAGCT GGGGATGGAG GACAGCCAGT AGGAAGTGAG 001360 001361 CTTTCGAGTC GGGCCCATGG TTCTCACTCC TCCGCATTAA CTCTCTCCTT CTGATTTCAA TCACTATCAC CAGGGATCAT 001440 001441 CCCCCCGGGG GATCCCTGCC TCCTTGAGTA TCTGAGCCCT CAACCCCAAC CATCTCCTTT GCTCACCCTA CTTAGCATGG 001520 001521 TGGAGAGAGC TTGACCTTTT CCCAGGGAAT TTCATGGGTG GAAATGCACA GGAATGATAC AGGGAGCACA GACACAGTCA 001600 001601 CACGTACCCA ACACACAGGG AGCTCCAGCT GGGTCCTAGC CCTCTTTCCA TACTACCTGG GTCATGGTTC CATTCACCTC 001680 001681 TCTCCCCCTT TCTCTACTGA GTCTGTTCTC AGCTTCATCC TGAACGAGGG TCCCTCTTTC AGGCCTAGGG AGAAACAGTG 001760 001761 GATGGGCTGA TGGTCCCTCC AGGTGATCCA GGGCCTCAGG TAGGACCAGC CCTGGCCCTG AGGGCCTCAC AAAGGTCCAG 001840 001841 GCAGTGGCCA CCTTTCCACA AGCACCTTGT GCTCTGCCCC TTCTACAAAT GAACCAAGAG CTACATGTAG CCCTTGGACA 001920 001921 AACATGAGGT TGCAAATAGC AGTCATTAGG GAGGTCTCCG ACACATGGAA ATGGAAAAAG AGGTCCTTCT GTTTGGTCCT 002000 002001 GAGGAGAGCT TAGATGTAAG ACAGCCTCCC AGGAAGATAG CATCCCTATC AGAGACCAGA CACACACACT GGCAGAAGTC 002080 002081 AAACTTTGCT GCAAAGCTGG ACCAACCCTG AGATCTTGCT AGGAAGGTCT CCTTAGCTGA GGCAAATGGA GGGAGAGACA 002160 002161 GGTGAATGGC TCCACAAAAA GCATAGGGCA CCCTGCAGGA TGAGGGGCAG GGGGTGGGGA GCCAGTGCTG GCTGCCTGGC 002240 002241 ACCTTGGGTG GGGCAGTAAG AAGGGTCTCT GAGGCCCAGC TGGAAGGCCC TCTGGTGGTG AGGCAGCAGC ATGACAGCCA 002320 002321 AGGGCAGAAG GGGACAGCAC AGGAACCAGA TTCCAGATCT GAGGCCGGGC TGAGGGATAG CATGGGGTGG GCTACGTGGT 002400 002401 AGTCATAGGA GAATAGATGa tatagatgat atacatatag atatagatat atagatatat tttttgagac agagtttcgc 002480 002481 cctgtcgtcc aggctggagt gtagtggagc gatctcggct cactgcatgc aacatctgcc tcccaggttc aagtgattct 002560 002561 cctgcctcag cctcctgaga agctgggatt acaggcgagc accagcatgc ctgggtaatt ttttggattt ttagtagaga 002640 002641 cagggtttca ccatgttgtc caggctggtc ttgaactcct gagctcaggc aatctgcctg cctcagcctc ccaaagtgct 002720 002721 aggattatag gcatgagcca ctgcgcctgg ccCATAGgag gatattgagc tgaaaagact tagcttctgc ctaggagagt 002800 002801 ctcacacttt agtgaaaagg gcagacaaat atacagttac agtagcttga gataagtgct gcattacaag agtaatagta 002880 002881 atggatatta taaaagcTTT TAACTGGCTG gcggtggctc acacctgtaa tgccagcact tcaggagcct aaggcaggag 002960 002961 aatcccttga ggccaggagt ttgagaccag cctggacaac atagggagac cctatctcca taacaattaa aaattaAAAA 003040 003041 ACAAATCTTA ACCAAGGGTG GTGGTGATGT GGGGAATAGG GTGAACCTTA GGGAACTGAC TTAGAAAATG GCACTCAGCC 003120 003121 AGGTCTTCTT GTTGCAAAGC ACAACTCAAT TATCTCCTGC TTGTGGGCTG CCTGTCGGCC TTTGGAGGGC AGAGGTCTTA 003200 003201 TTTCCCCAAA CTATAGATGA TCTACCCTCT CAGATTGGAG CTCCAGAAGA GATATACCTA GAGAAAAAGA GGAATTTTGC 003280 003281 CTCTTGCTGT CTAAAGCTTG ACTTCCAAAA TCCCAGCCCC TGCCTGAAAC CCAAATTGGA AGATGGTTTA GTTCATTAAT 003360 003361 TCatttgttc actcaagaaa tatttcttgt tgaagcctgc ggtgtgctag agctggaact acagcagaaa acaagacagt 003440 003441 ggtagcccct cccctcacga aAGACGTCAA TTAAACAATT AATTTTTAAA TTTTGTATTT CAAAATAACT TCAAAACTTC 003520 003521 TACAAAAGTT GCAAATAAAG CAtttttttc tgaaccattt caaattaagt tttacacatc cgacctcttt acccctaaac 003600 003601 acttcggttt gtcttttctt ttcttttttt tttttttttc agagacaggg tctcactctg tcacccaggc tggagtggag 003680 003681 tggcacaatc atagctcact gcagtcttga actcttgagc tcaaaggatc cttcctcctt ggcttcccaa agtactgggg 003760 003761 ttacaggtgt gagccaccat gcccagccag ttggtgtggg ggggggtagt tttttttatt tgtttgtttg tttgtttgtt 003840 003841 ttgaaacaca gtctcactgt tttgcctagg ctggagtgca atggctcaat ctcagctcac tgcaacctcc gcctcccggg 003920 003921 ttcaagtgat tctcatgcct caacctccag agtagctggg actacatgtg cacgccagaa tgcctggcTA ATTtttgtgt 004000 004001 ttttgttttt atttttattt tttgagatgg aatctcactc cgtagtccag gctagagtgc agtggtgcgt gtgcaatctc 004080 004081 agctcactgt gacctccacc tcccagttca agcgattctc ctgcctcagc ctcccgagta gctgagaata caggcaccca 004160 004161 ccaccatgcc cagctaattt ttgtattttt agtagagatg gggtttcacc aagttggtca ggctggtctc aaactcctga 004240 004241 cctcaagtga tctgcctgcc tcagcctccc aaagtgttgg gattataggt gtgagccact gctcccagcc TTTAAGagtc 004320 004321 ttctactggg agtagtttct cctttttgtc ttttgtgata ctgacacatt tgaagagtac tggccagttg ttttgtagaa 004400 004401 tgtccgtcag tttgagtttg tctgttgttt cctcataatt agattcagga tatgcacttc ccataggaac accacataag 004480 004481 tgacgttgta cccttctcac tatatctcat tgggaggatg tacatgtcag ttacagttac tggcgatttt aactttgatc 004560 004561 ctttcaataa ggtggtgtgt tagggttctc cagagaaaac agaaccaaca gagattgaga gagagagaga gagagagaga 004640 004641 gagagaatac gtatatataa aataaggaat tggctcgtgt gcttgtacag gcaagtccag tgcgggctgg cgggctaaag 004720 004721 accctggaga ccggatggtg cagatgaaat ttggaggcag cctgctggag aatttcctct ttctcatgga ggtccatctt 004800 004801 tttgttctgt tcaggcctca agtgattaga tgaggaacat tgtgaaggtt aactctgggt cttagcttga ctaaattaag 004880 004881 gaagacctaT TCAGAAGCCG Gggccaggcg cggtgg |
Predicted Small Protein
Name | NONHSAT093687_smProtein_3107:3358 |
Length | 84 |
Molecular weight | 9199.6284 |
Aromaticity | 0.0722891566265 |
Instability index | 76.656626506 |
Isoelectric point | 5.15277099609 |
Runs | 10 |
Runs residual | 0.0195448460509 |
Runs probability | 0.0423423423424 |
Amino acid sequence | MALSQVFLLQSTTQLSPACGLPVGLWRAEVLFPQTIDDLPSQIGAPEEIYLEKKRNFASC CLKLDFQNPSPCLKPKLEDGLVH |
Secondary structure | LLHHHHHHHHHLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLHHHHHHHHHHLHHHE EEELLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |