NONHSAT093923

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT093923

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3994 nt

Genomic location

chr3+:188604481..188608458

Exon number

2

Exons

188604481..188604508,188604515..188608458

Genome context

Sequence
000001 GGGATCATAC AATTGTATTG TCTTCAAAAC ACACACACAT ACACACACAC ACACACACAC ACACACACAC CCCTTCCAAG 000080
000081 AAAGCTGATC CTTCAGAAAA TAAATCTTAT TTTTAAGCAC TTGGGTTTTC AGGCCAGAAA ATTAATAAAT CCTAAACCTG 000160
000161 ACCCATTTTT GTAACAGCTA AAAAGGAGAA GAAAAAGCTA GTTAAATTTT GTGTGGATCC ATTTATCTCT TAAAATATGC 000240
000241 CAAAGCAATT TGAGGTGGGG GTGGAAACAG GTATTTATCT CTCATGCGTG ATTCTCTCTT TATATTTCTA TCTGTTGGGA 000320
000321 AAAGGGTAAA GAACTATTCT TGGTCATTAT TGATGTATTG TGTTGCCACT TTGTATGGTG CCTGCTGTGC TTTATCCCGA 000400
000401 GGCATAGCAG TAATCGTTAC TATCTTGACT CTTTCCTTCA TCACAAGAGA GTAAATATGA AGTCTGAATG TCGTTCCTCA 000480
000481 CCCCCAAATT GTTTAACTCT GCTTCCAAAC TAGTTTAAGA AATGCAAAAT GGGAAGAGCT AGCTTTTCTT AGATACATTT 000560
000561 CTTCCTTTTT TATTCTTTCT TGGGAGACGT TAAGTATAAA AGGGAAAAAG TCAGTTCCTT CTTCTCTCTC TTTCTCTTTG 000640
000641 GGTGACAGCA ATGCTCACTT AGTAATTATA AACTGGAAAT AGGAGAGTGG CTTGAGCAGG TTATGATATA TCTGCCCAAT 000720
000721 GTGTTTCATT CCTTCAAACA TAAACTTTGA GAGTAAAAGA GATTTTTATA ATTTAAATGC CAACGACAGG AATGGCCTCA 000800
000801 TGTTTTAACT TTCAAATAAT AAATGGGGAG TTGGTATTTG GGCAGAGTTT GCATTTTACT AATCCTATAT ACTTTGAGCT 000880
000881 TAGTTTTTAG AATTGTGTCA AATACATCAA CATATCAGGA TTATAGTGCC AAAAATAGTT AAAGTGCCTT GGTCCTCCCT 000960
000961 CTGTAGGCAG CAAATTGAAA CTAACATGGG ACCATGCCAT CCTTCTAGCA TAATGGAGAA GTCTGAACTG AGGAGTATCT 001040
001041 TTGATGAAAG ACATTTAGGA CCCTAGAAAC TAAATCTTGT CACCAAGACT TTATAGTAAA GTAGTAGCAA AATTATTTTT 001120
001121 AAAAGACTTT CTTCCTTTTA CTACCCATTT CCTCTCTTGG GAAAGCTGAT GAGCAAATTA TCCAAGACTC ATTTCTTTAT 001200
001201 TAGGCAAAGT CAGAATATTT CCCCTCTGAA AATCTGAATT ATGCCCTCAT TCTTTTTCAG GAAATATCTC AAAGAGCAAA 001280
001281 TAGAATTAAA CATGACACTT GATTGTCTGA TTATTTGGCA TGTATAAAAT TATCATGTGG CTTAATGTGC CTTAAGTGAA 001360
001361 AATTTAAACT TAGACCTGAA ACCTTTACAG TTGGATGTAG CGTTGAGCTT TTGCATGTTT TCTGTATAAT AAACCACTTT 001440
001441 TGTTTTGTTT GTTTTGTCTT TTAACCTACA CCTTTATCAT TACTCTAACA GATTTAGGGC TTCTCTTTCT CTACAGCTAA 001520
001521 GTAAGGGAAT ATGTGCAATT ATGAGACATA CAAAAAAGGA AAGGGAAAGG ACTTTCTAAG TAGCAAATCT GTGCCATGAA 001600
001601 GTAGATGTGG CGTGAAGATA CAGAGCCTGA GGATAGTAAT TTTCCCTGAG CCACGCACAC AGGCTTTTAT TTCATGCCTT 001680
001681 TTCTCTTTCT GTGCCGTCAC CTTTGAGGAA AACGATTGCA CCTTCTCCAA GTCTGCCTTT TTAACAGCTA CAGTTAAGTT 001760
001761 GGCAAGACTT CCCCAGCTCT GAATATAGCC ATTTGCCGAC TCCGGCCTCT TTGCGAGACT GACTCAAATC TGTGATCTTC 001840
001841 TGTTCAGCAT ACACATCAGC AAAGTGAGAA GATGAGCACT AAATATAGGC TCTATTAACT TTACTTTTAG ATTTACTGCC 001920
001921 TTCAAAAGGT GCCTATTCTG AGCAACATAA ACGTTATTCC TTACATATGT ATGTACACAC GGTACCCAGA GTCGTACTGT 002000
002001 GCAGCCTTCA AAAACATACC ATCAGAAAGA GTAGGTGCTG AGATAAGGAA ACTTTGCCAA ATGAAAGAAA GTCACTCACT 002080
002081 TCCAATATCC CCTCTCAAGC GGCTACCGTG AAACGGGCTG CAAACACATT CCCTGAGCAT CCCTTGCTGA TACAGCTTCT 002160
002161 TTATATTTAT ATCCTACTGG ATGGTAGCAT ATTGCTAAGG TTTCCTGTAC TCTGCTTCAA GGGAATGTAA GCTTTATGGC 002240
002241 ATTGAAACAT TTAGGAAAAA AAAGATGTTT AAGAGAATTA ATAGAGCCGT AGTCTGTATT AGGATGTGTG TCATATGTGT 002320
002321 GTTCTATAAA CTAAGCATCG GTGGGTTTAG AGTGTTAAAG TGTCAGCACA TTCCTTCTCC TTTTGTCTCT CAGGCTAACA 002400
002401 TGAGAGAAAA TAGAAAAGTC TTGGCTGTGG GGATTGGAAG CTCAGGGGGC CAAATGTCCT TGCCAGATCC TTAGAGCATT 002480
002481 ACTTTGACTC CTAAAAATAG TAGTGTATGT TATTTGATGG CTTTTGTTTC CATAGTTCCA TCACTGACAA AACTGTCAAT 002560
002561 ACTGTTGATG GAGCAGCAGC ATAGCCTAGA GTGATGCATT CTTACCCAGA GGTGGCAATA GGAGAGGGTC CATGTAAATA 002640
002641 GGACGAGGTA GACAGTGCAT GATTGTAGGA GAAGGGTTGA AGGGAGGACA TGATTCCAAA AAAGATCGTT CTCAATGTGT 002720
002721 CGTCTGACTC AACCAGCTGG CAGATTACAC TTGCCAAGTC GTTCCCTTTC CTTCTAAGTC AGTTGGCTCC ATATTCACTT 002800
002801 GAATATGCCT CTGTTTGGGC AAAGCAAGAT ACCTCCACTT AACCTTTATC CAAGGAAGCT CTTGGTGTCC TCTTGGTCAT 002880
002881 AAAGTTGTCT CCTACCTAAC CCAGTTTTAC CAAATGGAAG TAAAAGGGGA CAAACTATGG AAGATGGACT CCATGCCATT 002960
002961 GCAGTCAGCC ACCATTCTCT TTTCCATATA AGGAGCCCCA TTACATAAGC TACGGGTGAG GTTGGAACAG CTATGTTTCA 003040
003041 TAATTTCAAG AGTGTGACCA CCCTGCTCTA GTCATCATCA TTGGATGAAT CCAGTTGACT CTTTGGCAAA AGGGTGATAC 003120
003121 TTTTCACTAA AAATGCCTAC TCTTCCTGTT GATGTTCCTT TTCTGTTTTT ACCTTGTCCA ATTTCCACAC TAGTCATTTT 003200
003201 TTTTTATTTT TTAGAGGATC AGATTTTAGC GCTGGAAAAT GAGTTCAAAA ATTTCAGTGT AATGTCATAA GGATGTTGGG 003280
003281 ATACAGAGAT TTTTTTTTTC CTTGGAAACA AATGGACTGG GAAGAAACAC AGCATGGCTT TGCTCTGAGT TTCAATCTGA 003360
003361 TGATTATGAC CATGGAAGAT AGTCTTATGT AAAGGTTAAA TGGTGTTTAC AAGTGGATAG ATAAGGCGGA GACGGTGAGA 003440
003441 AGCCGGGTTT TCTCTATGCT AAATGTGTCT ACTAAGAGCA GCACTTCCTA CTAGCTAAGC ACAATCATAG CCCCACCGTG 003520
003521 ATGAGCTGCT AGTCTGAATA ACGTTCCCTG ACTTAGGGAA AGGCACACAA AAACATATAA AGAATATGTC TATTTTCATA 003600
003601 TGTGTGATAC TGACAGAGCC ATGGTATTCC TAAAATATAG GTTTCTCTTT TTTCTTGTAT TCTTAGCAAA TTGCATTTAT 003680
003681 TCACTACATT ACAAACCATC ACTGATGTAT CCAAAATAGC ACACATAGTT CAGTATGAAA ATAAGAGAAT AAAATCTGTT 003760
003761 ATAAGCAAGT GATTTAGGTA TTTTCTTTTG TGTTTATGCA TTATCTGACT ATATTAAAAC CTGTTTTTCT ATTTACCTTC 003840
003841 TATCAGTTTT CTCTACCAAT TATGTTTTTT CGATGCTCTA TAAGAATGAA TATGGAAATT ATATTTCTTT TTTCTGTAAA 003920
003921 AGAGTTGCAA CTACTTTATT ATATTTAGAA ATCCAATAAA CTTCTTATTA CATTCAAAAA AAAAAAAAAG AACA
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Predicted Small Protein

Name NONHSAT093923_smProtein_2264:2473
Length 70
Molecular weight 7656.1689
Aromaticity 0.0724637681159
Instability index 41.7305797101
Isoelectric point 10.2229614258
Runs 11
Runs residual 0.0200889654183
Runs probability 0.0543993191053
Amino acid sequence MFKRINRAVVCIRMCVICVFYKLSIGGFRVLKCQHIPSPFVSQANMRENRKVLAVGIGSS
GGQMSLPDP
Secondary structure LLLLLLEEEEEEEEEEEEEEEEEELLLEEEEELLLLLLLLLLHHHHHHLLEEEEEEELLL
LLEEELLLL
PRMN LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLL
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