NONHSAT094060
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094060 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1736 nt |
Genomic location |
chr3+:193796200..193841261 |
Exon number |
4 |
Exons |
193796200..193796257,193809242..193809948,193826643..193826963,193840612..193841261 |
Genome context |
|
Sequence |
000001 AACTTTGATG AAAAGCAGGG AAGTTTGGGA AGAAAATCCA AGACTTCTCT GGAGAGAGTC ATTTTTCACC TCCCAAGGAG 000080
000081 TTCAcatcta tgcacacgtt tccatcttac agaccaggaa acaggctcag agagaagaag ggaattATGT ACCTCGGTTT 000160 000161 AGAGCCAAAG TGTCCTGCCT GCATTCCAGC TGTTTCCATC CATGTCCATG TCAACTGGCA TCTGGAACTA CTCGTAGCAG 000240 000241 CATCCACTCA ATGTGAGTTG ACTAAATGGA GGAAAATCTA CTATGGTGCT TGGAAAAACT GGGACTCTCA TGATTTAGGA 000320 000321 TATAAAGATT TGTCGTCTGT CTGAATGGAA GAAAGAACAG GGCAGTGCTG TGGGGACACT AGGACGTCCT AAGGAAACAC 000400 000401 ACTCACTAAT TTAGGGTAAT CAATCAGGTA ATACTATTTA TGGGCTATTA ATGATACATG AGGATCACAC TCGGCCCAAG 000480 000481 TTCTTTGCTT TGTTTCACTC TCTTGCTCTG ACACCCTCTC CTAAGTTTCA AGGCTTTTCC CTCCCACCAC CCCTCCCAGC 000560 000561 CATATCACCA CCACCATATT TTAATTCCCC Atttttcttt ttttctttct tttttttttt ttttttttga gacagagtct 000640 000641 tcctctgtca cccaggctgg agtgcaatgg cacgatcttg gctcactgca acctccgcct cctggattca agtgattttc 000720 000721 ctgcctcagc ctcctgagta gcagggatta ccggcacgca ccaccgatac cagcctggaa gacaacggag ctgtcattct 000800 000801 gttaaaaaat taagAGAAGT ACGCAGAACC TGCCTTTTTC TAAATGAGAA GCTTTGGAAG CGACTGGACA CTTTTGGCCA 000880 000881 TTGCAGTCCA CAGGTAGCCT CTCTGGGGGC AATAGACAGA CTTTTTCACT TCTTGTATTT ACTCCCCAAA TGCTTGATTA 000960 000961 CATAGCTTGT CACCTGTCAG GGGGGCCAGC TAGCTAGTTG CTGGGTTGAG TGGTTAATCC AATGATTTGT ATAGCTGGCT 001040 001041 CACTAAGGAA ATCATAGGTA CTCAATATAT AGCTACTGAA CAATTCGAAG CATCTCTGCT CACACCACGA CTGAATGGAC 001120 001121 ACGTGAATCT AGCACATACA GTCGGAGGCC CGCAGAACCG GGATGGTCAT GTAtcccagc ctatgccagt tgtcccagca 001200 001201 tcagtgttac tagcattatc ttccactctc aaaagtgttc cagtttgaac cctaaatgat atggtcaccT CCACAGAACT 001280 001281 GGAGCAGGGA GGGTCTTGGG TGTTCATCTT TCCCACCAAT CTTATCTCCT ACAAGTGAGA TGGGTGTCCA GGGAGGATCT 001360 001361 GCCCAGGTTT ATGCTTTTGA TTTCCCCCTC CCTCTGCAGC CCTTCCCATG CCCTCCTGTC TCCGTGAGGG AGGGAGGACC 001440 001441 ACCCGCGCAT CCTGCACGCC AGGCCCATAT TGACGCCTGA TGCTTTTGCC TCCATTCAGA TCTCGTCTTT CTGTGAACCT 001520 001521 GAGGCTCATT TCAATTTTTC AAGGCAGGAC CACAACAAGC TCTGCATCTG CCTGCACACA AAGCCGAAAT CACAGTGCTT 001600 001601 GGGTGGTGGG GACCCTtttc cctgaaaaag aagaagtcag atcatttctt aaggtctctc ccagccttag aacctgtgat 001680 001681 tcATAAGAAA CTGGCTGAAG CTTTTGGTTT GTCAATATAC TCATGAACCA ATTTAC |
Predicted Small Protein
Name | NONHSAT094060_smProtein_89:343 |
Length | 85 |
Molecular weight | 9756.2173 |
Aromaticity | 0.119047619048 |
Instability index | 40.3119047619 |
Isoelectric point | 9.09844970703 |
Runs | 9 |
Runs residual | 0.0268425841674 |
Runs probability | 0.0329447094153 |
Amino acid sequence | MHTFPSYRPGNRLREKKGIMYLGLEPKCPACIPAVSIHVHVNWHLELLVAASTQCELTKW RKIYYGAWKNWDSHDLGYKDLSSV |
Secondary structure | LLLLLLLLLLLHHHHLLLEEEELLLLLLLLLLLLEEEEEELHHHHHHHHHHHHHHHHHHH HHHHHHHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |