NONHSAT094243

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT094243

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3826 nt

Genomic location

chr3+:195442311..195446106

Exon number

3

Exons

195442311..195444094,195444102..195445762,195445771..195446106

Genome context

Sequence
000001 AAGTTCAAAG ACATGCAGAG CTAATCTATG GTGATAGAGA TAAGAATGGT GGTTACACTG AAATGGGAGG ATCGCTCAAA 000080
000081 CCCAGGAGGC GGAGGCTGCA GTGAACCATG ATGGAGCTGC ACTCCAGCTT TGGAGACAGA GCGAGACCCT GTCTCTAAAA 000160
000161 AAAAAAAAAA AAAAAAAATG ATTGTTCCAT TCTGTGGTGG CAAGTGGGGG CTTGACTGGA AGGGAACACA AGGGCACCTG 000240
000241 TTGAGGTGCT GAGCACGTTC TGTATCTTGA CCTGAGTGTC GGATACATCC TGGGGATACA TACGTACATA AAAATTCATC 000320
000321 AGGGTATACG CTACTTAAGC TGGGCGTAGT TTACAGTATG TAGGTTACAA CATAAAAAAG AAGTGAATGA ACCAAAGAAT 000400
000401 ACTGGGCTCC CTGGCGTTTC CTCTTCTGCA ACCCAAGGAA ATAAGCCTCG GTGTGGAGAG GGCCTGTCCT CAGGGCCTGG 000480
000481 CAAATGTAGG CGATTCTTAC CACGTCTCCT TCGGTAAGCC CACCTGGCAA GTTCTCATCC ACATAATCTG TGCATGCTCA 000560
000561 ACATTTGAAA CCAGTGGGGA CCCATTTGGA CCCCAAGAGT TGGTATTAGA GATCATTTTA AAGTGAAAAC TGGCCAGGCA 000640
000641 CGATGGCTTA CGCCTGTAAT CCCAGCACTT TGGGAAGCTG AGGTGGGCGG ATCACATGAG GTCGGGAGTT CGAGACCAAC 000720
000721 TTGGCCAACA TGGTGAAACC CTGTTGACTC AGGATGACTC AGATTAGAGC AGGTGACTGG GGGTGACTCA GGATGGAGCA 000800
000801 GGTGATAGAG GCTAGGAGGG GGTTGTTTAC TGAAACTAGG GGCAAGGAGA TGAAGAAAAC GAGGAAGTTA AACTTTAAAA 000880
000881 TGAAGAGCTG AACATACTGA TACATTGATT CTTTGGAGAG GATCTCAGAA CTCATTGTAC TTAACAATTT ACAGGCTAAA 000960
000961 ACCTTTGAAG AAGAATTTAT TATATCCTAC AAACCTGGGA GGCAGAGGTT GCAGTGAGCC AAGATTGGGC CATCGCACTC 001040
001041 CAGCCTGGGC AATAAGAATG AAACTCTGTC TCAAAAAAAA CAAAAGTTGG CCAGGGCTGG GCGTGGTGGC TCACACCTGT 001120
001121 AATCCCAGCA CTTTGGGGGG CTAAAGCAGG TGGATCACCT GAGGTCAGAA GTACGAGACC ATCGTGGCTA ATATGGTGAA 001200
001201 ACCCCATCTC TACTAAAAAT ACGAAAAAAG AAAAAAAAAA ATTAGCCAAG CACGGTGGTG CACACCTGTT ATCCCAGCTG 001280
001281 CTTAGGAAGC TGAGGCAGGA GAATTGCCTG ATCCCAGAGG CAGAGGTTGC AGTGAACTGG GATTGTGCCA CTGCACTCCA 001360
001361 GCCCAGGCGA CAGAGCAAGA TTCTGTCTCA AAAATAAATA CATAAATAAA GTTTTAGAGC AGGAATGAAA GGAAGTAAAG 001440
001441 TACACTTGGA AGAGCTGTGT TGGCAACTGG AGAGATCCGA GTGCCTCATC TGACCCTTGA CTTGGGATTA ATACATTGGC 001520
001521 ATGAGATGTG AGCAGTGACT CAAAGTTGCT CAGAAAAAAA TCTTCCCCCG CTATTTAGTA CTGCAGCTGG CACCTGCCCT 001600
001601 CCCCACACAC TGCAGCTGGC ACCTGCCCTC CCCACGCACT GCAGCTGGCA CCTGCCCTCC CCACACCAGT ATTTGGTACT 001680
001681 GCAGCTGGCA CCTGCCCTCC CCTCTGCTAT TTAGTACTGC AGCTGGCACC TGCCCTCCGC ACAGCAGTAT TTAGTACTGC 001760
001761 AGCTGGCACC TGCCCTCCCC ACACCAGTAT TTAGTACTGC AGCTGGCACC TGCCCTCCCC TCTGCTATTT AGTACTGCAG 001840
001841 CTGGCACCTG CCCTCCCCAC GTCAGTGTTC AGGATTCTTT CTCCCTGTTT TTCTTTTTTT TCCATAGTTT TCACCTTTCT 001920
001921 ATAATTCACT TATTTGTTAT GTTTATTGTT TTGTGAAAGG AAAATAAATC TTGGGCCCCC AAAGTCACTA AGCTAAAGGG 002000
002001 GAAAGTCAAG CCGGGAATGG CTTAGGGCCG ACCTGCCCCC CATTCTATTC AAAATCACCC CCTGCTCACT GAGATAGATG 002080
002081 CATATCTGAT TGCCTTCTTT GGAAAGGCCC ATCAGAAACT CAAAAGAATG CGACCTTTGT CTCTCACCCA CCTGTGACCT 002160
002161 GGAAGCTTTC TCCTGGCTGC GAGTTGTCCC ACGTTTGCTT GGCGTTGCCC GGCCTTTTCC AGACTGAACC AATGTTCATC 002240
002241 TTACATGTGT TGATTGATGT CTCATGTCTC CCTAAAACGT ATGACCACCT TGGCACATGT CGTCAGGACA TCCTGAGGCT 002320
002321 GTGTCACGGG TGTGCATCTT CAACCTTGGA ACAATAAACT TTCTAAATTA ACTGAGACCT GTCTCAGATT TGGGGGGTTC 002400
002401 ACATTTTGGT AACCATGGAG GGATTCTGAG TTGAGGTGCC CCTGACCTTT GACAGATCTA TTGGTGCTTG GTAGCAGCAT 002480
002481 GAGCTAACCT TATGGCTCAA ACCAACAGGA CAATTTGCTG AGGTCTGGGA GCACCCCCTC CAGAGAGTCC CTGATCTCTC 002560
002561 AAAACTTGGT CGTGATCTAA AGTTTATTTG ATGTACAACT CCCCCTCCCC TTCTTTTGGA GTTTTATTTG CTTCCAAGAA 002640
002641 GGAAGGCAAG ATTTCCTGGG TCCGTGATGA TGGAAGGCTG ACAACTCTTT TATGGAGTCT GAGCTTGCTC CCAGCAGGGA 002720
002721 AGACAAGTTC GAGTTTTTTT CCTGCTTCAA GGATGGTAGA GAGCAGTCTT CAGCCTGAGA CCCATCCCTA GGTAAGTAGC 002800
002801 TGAACTGAGG TTTTGTCTTG GCTGAAGGTT AACAACCAGC TGGTCTGAAT TTCTTCTTCC CATTAGAGCA GTCTGTGGTC 002880
002881 ATATCATTTG ACTTCTGTTG TTGTTGTTTT TTCTGGTCTT TCTCTCATCA GATTTGACCA ACTCTACCTG ACTTGGTCAA 002960
002961 ATCCAAGTGA GAATTCCAAA TTATGGGTAA CAAAGCCTCT CTAATTTGGC TAAAATTCCT TGCAGCTGCA AAAGAGGAAA 003040
003041 AAACTAAACG AAAAAAACCA ACAAATCACG TGCTTGGTTT CTGTGTTTGC TTTCTGTCTT AAAAAACAAA CAAACAAAAA 003120
003121 CAACAAATGC TCTTTCACTT ACTTTTCTTC CTCCCTATAC CTCCTCCTGC CTTTGCCATC TGCGGGACCA AAAAAATCTA 003200
003201 GAGAAGGCTT CCAATGACTC GAGCCCCTTT AAAGGATCCG GAACAAAGGG GCCACTCACC CCTTCCAGGG TGCTCTGTTT 003280
003281 TCTTTGTGGA GTTTCAAGAG TGATGGGCGG ATTCTTCTTA GGTCTAAAGC TCTGCTGTCT TCCTGTACGG CATGACCTGA 003360
003361 CCTCTTTGGC TTTGGGGGAA CCAGAGATGA CCCTGCACTG TGAGAGGATT TGACCTTGGC GTGTGTAATG GCAGACGAGA 003440
003441 ACTACAAAGA AGGGGTGGCT GAGCACAGTT TACAGGGAAT GGTCTTGGCT GTTTTTTTTT TTTTCTCTTC TAGGAAGCTG 003520
003521 TGATTTAAGG ATCCTAATTC TAGTTCAGAG ATGCATCCTA AAGGGTCTTC TCTATTGCTT TTTCTCCCAA AATGAATCTC 003600
003601 AGTTTGGGTT GTCTATGTAT TTGCATGAGG AACTGAACTG TTGTTGTCAT AGGTAAATGA GAGATTGAGC TTTCTCAGCT 003680
003681 CCAAAGAGAA AGGGCGTTTG CTCCTCCCAG CCGAGTACTC CATAGGGTTC ATGGCGCCTC TACTTGCCAG AGTTTATGTA 003760
003761 AAGTGGAAGT AATATGGTCT TTCTGCACAT TTACATTAAA AAAAAAGGAG CCCTGAGGTT GACCTG
[back to top]

Predicted Small Protein

Name NONHSAT094243_smProtein_386:625
Length 80
Molecular weight 8623.9528
Aromaticity 0.0759493670886
Instability index 56.6379746835
Isoelectric point 5.47955322266
Runs 12
Runs residual 0.0116178255592
Runs probability 0.047540187246
Amino acid sequence MNQRILGSLAFPLLQPKEISLGVERACPQGLANVGDSYHVSFGKPTWQVLIHIICACSTF
ETSGDPFGPQELVLEIILK
Secondary structure LLHHHHHHHLLLLLLLLEEELLLLLLLLLLLLLLLLLEEELLLLLLLLEEEEEEELLLLL
LLLLLLLLLHHHEEEEEEL
PRMN -
PiMo -