NONHSAT094243
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094243 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3826 nt |
Genomic location |
chr3+:195442311..195446106 |
Exon number |
3 |
Exons |
195442311..195444094,195444102..195445762,195445771..195446106 |
Genome context |
|
Sequence |
000001 AAGTTCAAAG ACATGCAGAG CTAATCTATG GTGATAGAGA TAAGAATGGT GGTTACACTG AAATGGGAGG ATCGCTCAAA 000080
000081 CCCAGGAGGC GGAGGCTGCA GTGAACCATG ATGGAGCTGC ACTCCAGCTT TGGAGACAGA GCGAGACCCT GTCTCTAAAA 000160 000161 AAAAAAAAAA AAAAAAAATG ATTGTTCCAT TCTGTGGTGG CAAGTGGGGG CTTGACTGGA AGGGAACACA AGGGCACCTG 000240 000241 TTGAGGTGCT GAGCACGTTC TGTATCTTGA CCTGAGTGTC GGATACATCC TGGGGATACA TACGTACATA AAAATTCATC 000320 000321 AGGGTATACG CTACTTAAGC TGGGCGTAGT TTACAGTATG TAGGTTACAA CATAAAAAAG AAGTGAATGA ACCAAAGAAT 000400 000401 ACTGGGCTCC CTGGCGTTTC CTCTTCTGCA ACCCAAGGAA ATAAGCCTCG GTGTGGAGAG GGCCTGTCCT CAGGGCCTGG 000480 000481 CAAATGTAGG CGATTCTTAC CACGTCTCCT TCGGTAAGCC CACCTGGCAA GTTCTCATCC ACATAATCTG TGCATGCTCA 000560 000561 ACATTTGAAA CCAGTGGGGA CCCATTTGGA CCCCAAGAGT TGGTATTAGA GATCATTTTA AAGTGAAAAC TGGCCAGGCA 000640 000641 CGATGGCTTA CGCCTGTAAT CCCAGCACTT TGGGAAGCTG AGGTGGGCGG ATCACATGAG GTCGGGAGTT CGAGACCAAC 000720 000721 TTGGCCAACA TGGTGAAACC CTGTTGACTC AGGATGACTC AGATTAGAGC AGGTGACTGG GGGTGACTCA GGATGGAGCA 000800 000801 GGTGATAGAG GCTAGGAGGG GGTTGTTTAC TGAAACTAGG GGCAAGGAGA TGAAGAAAAC GAGGAAGTTA AACTTTAAAA 000880 000881 TGAAGAGCTG AACATACTGA TACATTGATT CTTTGGAGAG GATCTCAGAA CTCATTGTAC TTAACAATTT ACAGGCTAAA 000960 000961 ACCTTTGAAG AAGAATTTAT TATATCCTAC AAACCTGGGA GGCAGAGGTT GCAGTGAGCC AAGATTGGGC CATCGCACTC 001040 001041 CAGCCTGGGC AATAAGAATG AAACTCTGTC TCAAAAAAAA CAAAAGTTGG CCAGGGCTGG GCGTGGTGGC TCACACCTGT 001120 001121 AATCCCAGCA CTTTGGGGGG CTAAAGCAGG TGGATCACCT GAGGTCAGAA GTACGAGACC ATCGTGGCTA ATATGGTGAA 001200 001201 ACCCCATCTC TACTAAAAAT ACGAAAAAAG AAAAAAAAAA ATTAGCCAAG CACGGTGGTG CACACCTGTT ATCCCAGCTG 001280 001281 CTTAGGAAGC TGAGGCAGGA GAATTGCCTG ATCCCAGAGG CAGAGGTTGC AGTGAACTGG GATTGTGCCA CTGCACTCCA 001360 001361 GCCCAGGCGA CAGAGCAAGA TTCTGTCTCA AAAATAAATA CATAAATAAA GTTTTAGAGC AGGAATGAAA GGAAGTAAAG 001440 001441 TACACTTGGA AGAGCTGTGT TGGCAACTGG AGAGATCCGA GTGCCTCATC TGACCCTTGA CTTGGGATTA ATACATTGGC 001520 001521 ATGAGATGTG AGCAGTGACT CAAAGTTGCT CAGAAAAAAA TCTTCCCCCG CTATTTAGTA CTGCAGCTGG CACCTGCCCT 001600 001601 CCCCACACAC TGCAGCTGGC ACCTGCCCTC CCCACGCACT GCAGCTGGCA CCTGCCCTCC CCACACCAGT ATTTGGTACT 001680 001681 GCAGCTGGCA CCTGCCCTCC CCTCTGCTAT TTAGTACTGC AGCTGGCACC TGCCCTCCGC ACAGCAGTAT TTAGTACTGC 001760 001761 AGCTGGCACC TGCCCTCCCC ACACCAGTAT TTAGTACTGC AGCTGGCACC TGCCCTCCCC TCTGCTATTT AGTACTGCAG 001840 001841 CTGGCACCTG CCCTCCCCAC GTCAGTGTTC AGGATTCTTT CTCCCTGTTT TTCTTTTTTT TCCATAGTTT TCACCTTTCT 001920 001921 ATAATTCACT TATTTGTTAT GTTTATTGTT TTGTGAAAGG AAAATAAATC TTGGGCCCCC AAAGTCACTA AGCTAAAGGG 002000 002001 GAAAGTCAAG CCGGGAATGG CTTAGGGCCG ACCTGCCCCC CATTCTATTC AAAATCACCC CCTGCTCACT GAGATAGATG 002080 002081 CATATCTGAT TGCCTTCTTT GGAAAGGCCC ATCAGAAACT CAAAAGAATG CGACCTTTGT CTCTCACCCA CCTGTGACCT 002160 002161 GGAAGCTTTC TCCTGGCTGC GAGTTGTCCC ACGTTTGCTT GGCGTTGCCC GGCCTTTTCC AGACTGAACC AATGTTCATC 002240 002241 TTACATGTGT TGATTGATGT CTCATGTCTC CCTAAAACGT ATGACCACCT TGGCACATGT CGTCAGGACA TCCTGAGGCT 002320 002321 GTGTCACGGG TGTGCATCTT CAACCTTGGA ACAATAAACT TTCTAAATTA ACTGAGACCT GTCTCAGATT TGGGGGGTTC 002400 002401 ACATTTTGGT AACCATGGAG GGATTCTGAG TTGAGGTGCC CCTGACCTTT GACAGATCTA TTGGTGCTTG GTAGCAGCAT 002480 002481 GAGCTAACCT TATGGCTCAA ACCAACAGGA CAATTTGCTG AGGTCTGGGA GCACCCCCTC CAGAGAGTCC CTGATCTCTC 002560 002561 AAAACTTGGT CGTGATCTAA AGTTTATTTG ATGTACAACT CCCCCTCCCC TTCTTTTGGA GTTTTATTTG CTTCCAAGAA 002640 002641 GGAAGGCAAG ATTTCCTGGG TCCGTGATGA TGGAAGGCTG ACAACTCTTT TATGGAGTCT GAGCTTGCTC CCAGCAGGGA 002720 002721 AGACAAGTTC GAGTTTTTTT CCTGCTTCAA GGATGGTAGA GAGCAGTCTT CAGCCTGAGA CCCATCCCTA GGTAAGTAGC 002800 002801 TGAACTGAGG TTTTGTCTTG GCTGAAGGTT AACAACCAGC TGGTCTGAAT TTCTTCTTCC CATTAGAGCA GTCTGTGGTC 002880 002881 ATATCATTTG ACTTCTGTTG TTGTTGTTTT TTCTGGTCTT TCTCTCATCA GATTTGACCA ACTCTACCTG ACTTGGTCAA 002960 002961 ATCCAAGTGA GAATTCCAAA TTATGGGTAA CAAAGCCTCT CTAATTTGGC TAAAATTCCT TGCAGCTGCA AAAGAGGAAA 003040 003041 AAACTAAACG AAAAAAACCA ACAAATCACG TGCTTGGTTT CTGTGTTTGC TTTCTGTCTT AAAAAACAAA CAAACAAAAA 003120 003121 CAACAAATGC TCTTTCACTT ACTTTTCTTC CTCCCTATAC CTCCTCCTGC CTTTGCCATC TGCGGGACCA AAAAAATCTA 003200 003201 GAGAAGGCTT CCAATGACTC GAGCCCCTTT AAAGGATCCG GAACAAAGGG GCCACTCACC CCTTCCAGGG TGCTCTGTTT 003280 003281 TCTTTGTGGA GTTTCAAGAG TGATGGGCGG ATTCTTCTTA GGTCTAAAGC TCTGCTGTCT TCCTGTACGG CATGACCTGA 003360 003361 CCTCTTTGGC TTTGGGGGAA CCAGAGATGA CCCTGCACTG TGAGAGGATT TGACCTTGGC GTGTGTAATG GCAGACGAGA 003440 003441 ACTACAAAGA AGGGGTGGCT GAGCACAGTT TACAGGGAAT GGTCTTGGCT GTTTTTTTTT TTTTCTCTTC TAGGAAGCTG 003520 003521 TGATTTAAGG ATCCTAATTC TAGTTCAGAG ATGCATCCTA AAGGGTCTTC TCTATTGCTT TTTCTCCCAA AATGAATCTC 003600 003601 AGTTTGGGTT GTCTATGTAT TTGCATGAGG AACTGAACTG TTGTTGTCAT AGGTAAATGA GAGATTGAGC TTTCTCAGCT 003680 003681 CCAAAGAGAA AGGGCGTTTG CTCCTCCCAG CCGAGTACTC CATAGGGTTC ATGGCGCCTC TACTTGCCAG AGTTTATGTA 003760 003761 AAGTGGAAGT AATATGGTCT TTCTGCACAT TTACATTAAA AAAAAAGGAG CCCTGAGGTT GACCTG |
Predicted Small Protein
Name | NONHSAT094243_smProtein_386:625 |
Length | 80 |
Molecular weight | 8623.9528 |
Aromaticity | 0.0759493670886 |
Instability index | 56.6379746835 |
Isoelectric point | 5.47955322266 |
Runs | 12 |
Runs residual | 0.0116178255592 |
Runs probability | 0.047540187246 |
Amino acid sequence | MNQRILGSLAFPLLQPKEISLGVERACPQGLANVGDSYHVSFGKPTWQVLIHIICACSTF ETSGDPFGPQELVLEIILK |
Secondary structure | LLHHHHHHHLLLLLLLLEEELLLLLLLLLLLLLLLLLEEELLLLLLLLEEEEEEELLLLL LLLLLLLLLHHHEEEEEEL |
PRMN | - |
PiMo | - |