NONHSAT094287

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT094287

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5888 nt

Genomic location

chr3+:195725734..195731964

Exon number

3

Exons

195725734..195727250,195727577..195727607,195727625..195731964

Genome context

Sequence
000001 GAAGACATTT TCTTTCTCTT CTGAGTAACT GAAATAAAAT CTGGCCTTTG TGAAACCCTG GAAATACCAC GACCCTCAAC 000080
000081 TAGAAACACC AATACCAGCT CCTCCGTGAG TTCCCAGCTC CACAACCTAA GACATCAGAG GCAGCATTGG TTCCTCACGT 000160
000161 AGATTCCAGC TCCGGGACCC CCATATTTGA ACCGCAAGAC CATCTCATCC CTGGATCTCC AGCTGCACCA Cactcaaatt 000240
000241 agaacaacat cagctcctcc ccaggtctcc acctgcacag ccctcaaacg ggaacgtcag ctcctccccg ggtctccagc 000320
000321 tgcagggccc taaaactaga acatcagctc ccgcctgggt cgctagctgc accaccctca aactggaaca tcagatcccc 000400
000401 atgggtctcc agctgcaggg ccctcaaact ggaacatcag ctccccacca gatctccagc tgcatggacc tcaaactgga 000480
000481 acatcagcaa cccgccgggt ctccagctGC ACTGCCTGca aactggaaca tgagctccct gccgggtctc cagctgcttg 000560
000561 gccctcaaac tggagcatca gctccccacc agatctccag gtgcatggcc ctcaaactgg aatatcagtt ccaccctggg 000640
000641 gctccaggtg cacagccctc aacctgcaac atcagctctc cactgggact ccagatgcac ggccctcaaa ctggaacatc 000720
000721 agctccctgc cgggtctcca gatgcacggc ctgcaaactg gaacatcagc tcccgtcagg tctccagctG CACGGCCctc 000800
000801 aaactggaat atcagctcca ccccggggct ccaggtgcac agccctcaaa ctgcaacatc agctctcagc caggtaccca 000880
000881 gctgcatggc cctcaaactg caacatcagt tcccccccgg gtctccagct tcacggccct caaactggaa catcagctcc 000960
000961 ccaaccaggt ctccagctcc acGGCCCTCA ACCTGCAACA TCAGCTCCCC ACCAGATCTC CAGATGCACG GCCCTCAAAC 001040
001041 TGGAACATCG GCTCCCCACA GGGTCTCCAG CTGCATGGAC TTAAACTGGA ACATCAGCTC CCAGgccctc aaacaggaac 001120
001121 atcagctccc aggccctcaa acaggaacat cagctcccca cagggtctcc agctgcatgg ccctcaaatt gcaacatcag 001200
001201 ttccccgctg ggtctccagc tgcaccgctt caaactgcaa catcagttcc cccctgggtc tccagctgca ccacttcaaa 001280
001281 ctgcaacatc agctccccgc tgggtctcca gcagcatggc cctcaacctg gaacatcagc tcccccgaac ccgggtctcc 001360
001361 agctccacag ccctcaacct ggaacatcag ctccccccaa cccgggtctc cagctCCACG GCCctcaaac tggaacatca 001440
001441 gctccctgcc gggtatccag ttgcacggcc ctcaaactgg aacatcagct ccccaccagg tctccagctg cacggccccc 001520
001521 tcaaactgga acatcagctc cccgccagCc tcaaactgga acatcagctc cctgccaggt caccagctgc atggccctca 001600
001601 aactgggaca tcacctcccc acgaggtctc cagctgcatg gccctcaaat tgcaacatca gctcccatca gagtctccag 001680
001681 ctgcatggcc atcaaactgg aacatcagct ccccggccct caaaccggaa catcagctcc ccgccggatc tccagctGCA 001760
001761 CAGCCGTCAA CATCAGctcc tccccgagtc ctcagctgca cgaccctcaa gttagaacat cagcttctcc ccaagtcttc 001840
001841 agctgcgtga ccctcaatct agaacatcag ttcttctctg ggtctgcagc tgcaagaccc tgaaactaca tcagcttctc 001920
001921 tccagttctg cagctgcaag accctcaaac tacaacatca gcttccctcc aggtctccag ttccatgacc ctaaatctag 002000
002001 aacatcagct ccttcctgag tctccaactg aaagaccctc aaagcgaaca acatcagttc ctccccgagt cttcagctgc 002080
002081 acgacactca atctacaaca tcagctcctg tctggttctc cagctgcacg accctcaaac tacaacctca gctcttcccc 002160
002161 gagtcttctg ctgcatgacc ctcaatctag aacataagct cctctctggg tgtccacctg tagggacctc aaattagaac 002240
002241 gtcagctcct cccagagtct tcagctgcat gaccctcaat ctttaacatc agctcctctc caggtctgca gctccatgac 002320
002321 cctaaaaata catgagcagc tcctccctga atcttcagct gtacgaccct caaactacaa catcagctcc tgtctgcacc 002400
002401 tccagctgca gagccctcaa actagaatat cagctcctcc ccgagtcttc agctgcacga ccctcaaact agaacatcag 002480
002481 ctcctgtaca gatttccaac tgtagggccc tcaaactaga acatcagctc ctccccgagt cggcagctgc aagaccctca 002560
002561 aattaccaac tcagctcctc ccggagtctt cagctgcatg accctcaatc tcgaacatca gatactctct gggtctgcag 002640
002641 ctgtagggcc ctcaatctag aacatcagct cctcccgagt cttcagctgc atgactctca aactagaacc tcagctcctc 002720
002721 cccgagtctt cagctgcacg acccttaatc tagaacctca gctcctcccg agtcttcagc tGCACGAccc tcaatctaga 002800
002801 acatcagctc ctctccaggt ttgcagaaga ccctcaaact agaacatcag cttctccctg agtcttcacc tgcatgaccc 002880
002881 tcaatctaga acatcagctc ctctgcaggt ttgcagctgc aagaccctca aactacaaca tcagctcctc tccaggtctg 002960
002961 cagctGCAAG Accctcaaac tggaacatca gctcctctcc aggtctgcag ctgcaagacc ctcaaactag aacatcagct 003040
003041 cctccctgag tcttcacctg catgaccctc aatctagaac atcagctcct ctccaggtct gcagctgcaa gaccttcaaa 003120
003121 ctagaacatc agctcctctc caggtctgca gctgcaagac cctcaaacta gaacatcagc tcctgcccga gtcttcagca 003200
003201 gcatgaccct caatctagaa catcagctcc tctctggatc tgcagctgca agaccctgaa actagaacat catcttctct 003280
003281 ccaggtctcc agttccgtga ctctaaatct agaacatcag ctcctccctg agtctccaac tGAAAGACCC TCAACGCGAA 003360
003361 AAACATCAtc tcctccccaa gtctgcagct gcaagaccct caaactagaa catcagctcc tccccaggtc tgcagctgca 003440
003441 cgaccctcaa tctagaacat cagctccacc ccaggtcttc agctgcacga ccctcaaact agaacatcag ctcctccctg 003520
003521 ggtctgcagc tggaagatcc actaactaga acatcaactc ctgtctgggt ctccagctcc atgaccctca atcaagatta 003600
003601 tcagctcctc cctgaatcac cagctgaaag accctcaatg tgaacaacat cagctcctcc ccgagtcctc aactgcacCA 003680
003681 CCCTCAAACT acaacaccag ctcctccccg agtcttcagc tgcaggaccc tcaatctaga acatcagctc ctccccgagt 003760
003761 cttcagctgc acgaccctca atctagaaca tcagctcctc tccgcgtctG CAGCTAGAAG ATCCACTAAC TAGAACATTA 003840
003841 GCTCCTGTCC AGGTCTCCAG CTCCATGACC CTCAATCAAG ATTATCAGCT CCTCCCTGAG TCTCTAGCTG AAAGGCTCTC 003920
003921 AATGCAAACA ACATTAGctc ctccccaagt cctcaacagt gcgaccctca aactagacca tcagctcctc cccgagtctt 004000
004001 cagctgcacg accctcaatc tagaacatca gctcctctcc aggtctgcag ctgcaagaac ctaaaagtag aacatcacct 004080
004081 actccctggg tctgcagctg gaagatccac taactagaac atcagctcct gtccgggtct ccagctccat gaccctcaat 004160
004161 caagaTTATC AGCTCCTCCC TGAATctcca cctgaaagac cctcaacgag aacaacatca gctcctccct gagtcctcaa 004240
004241 ctgcatgacc ctcaaactac aatatgagct cctcgccgag tcttcagctg cacgaccctc aatctagaAC ATCAGCTCCT 004320
004321 CTCCGTGTCT GCAGCTAGAA GATCCACTAA CTAGCACATT AGCTCCTGTC CGGGTCTCCA GCTCCATGAC CCACAGTCAA 004400
004401 GATTATCAGC TCCTCCCTGA GTCTCCAGCT GAAAGACTCT CAACGCAAAC AACATTAGct cctccccgag tcttcaacag 004480
004481 cgcgaccctc aaactacaac ttcagctcct ccccgagttc agctgcacga ccctcaatct agaACATCAG CTCCTCTCCG 004560
004561 CGTCTGCAGC TGCAAGAACC TAAGAGTAGA ACATCAGCTC CTCCCCGAGT CTCCACCTGA AAGACCCTCA ATGAGAACAA 004640
004641 CATCAGctcc tccccgagtc ctccactgca tgaccctaaa actacaacat cagctcctcg ccgagtcttc agctacatga 004720
004721 ccctcaatct agaacatcag ctcctctcca ggtctgcagc tgcaagaaca taaaagtaga acatcatctc ctccctgggt 004800
004801 ctgcaactgg aagatccact aactagaata tcagctcctg tccgggactc cagctccatg accctcagtc aagattatca 004880
004881 gctcctccct gagtctccac ctgaaagacc ctcaatgcga acaacatcag ctcctccctg agtcttcagc tgcacgaccc 004960
004961 tcaatctaga acatcagctc ctccctgagt cttcagctgc aacaatctaa aactagaaca tgagctcctc cctgagtctc 005040
005041 cagctGAAAG ACCCTCAACG TGAACATCAG ctcctccccg agtcctcaac agcgcgaccc tcaaactaca acatcagctc 005120
005121 ctccccgagt cttcagctgc atgaccctca atctagaaca tcagctcctc tccgggtctg cagctgcaag aacctaaaac 005200
005201 tagaacatca gctcctccct gggtctgcag ctggaagatc cactaactag aacatcagct cctgtccggg tctccagctc 005280
005281 catgaccctC ATTCAAGATT ATCAGCTCCT CCAAGTCTCC AGTGAAAGAC CCTCAACGCG AACAACATCA Gctccacccc 005360
005361 gagtcctcaa ctgcacgacc ctcaaactac aacatcagct cctccccgag tcttcagctg catgaccctc aatctagaac 005440
005441 atcagctcct ctccggatct gcagctgcaa gaccctcaaa ctagaacatc agctcctctc cgggtctgca gctGCAGGGC 005520
005521 CCTGAAGGTA GAGCATCAGC TGCTCCCCGA GCTAGAACAC CTGTCCCACC TGGATCTCCA GCTCCACGAC CCTCACAGAA 005600
005601 GAACAGCCAC ACTGGCTCCT TCATTGTCTT CAGCTCCACA ACCTAAGACA TCAGTGGCAG CACCGGCTCC TCCCTGGACG 005680
005681 TCCAGCTCAA CGACTCTCAT AGACTTAAAA GGCAGCACCT GCTCCTCCCC AAGGCTCCAA CTCCACCACC CTCGGATTTG 005760
005761 AACAGCGGTA GCACCACCTC CTCTCCAGGT CTTCAGCCCC ACGTCCCTCC CTGAACAATC CCTTCTTGTG AAATTCAGCA 005840
005841 GTCAAGAAAT CTGCAGCGAA AGTAAATGAA TAAATGTTTT GTTTTCAA
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Predicted Small Protein

Name NONHSAT094287_smProtein_1637:1849
Length 71
Molecular weight 7402.3841
Aromaticity 0.0285714285714
Instability index 89.8657142857
Isoelectric point 9.10296630859
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0361369773135
Amino acid sequence MALKLQHQLPSESPAAWPSNWNISSPALKPEHQLPAGSPAAQPSTSAPPRVLSCTTLKLE
HQLLPKSSAA
Secondary structure LHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLHH
HHLLLLLLLL
PRMN -
PiMo -