NONHSAT094287
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT094287 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5888 nt |
Genomic location |
chr3+:195725734..195731964 |
Exon number |
3 |
Exons |
195725734..195727250,195727577..195727607,195727625..195731964 |
Genome context |
|
Sequence |
000001 GAAGACATTT TCTTTCTCTT CTGAGTAACT GAAATAAAAT CTGGCCTTTG TGAAACCCTG GAAATACCAC GACCCTCAAC 000080
000081 TAGAAACACC AATACCAGCT CCTCCGTGAG TTCCCAGCTC CACAACCTAA GACATCAGAG GCAGCATTGG TTCCTCACGT 000160 000161 AGATTCCAGC TCCGGGACCC CCATATTTGA ACCGCAAGAC CATCTCATCC CTGGATCTCC AGCTGCACCA Cactcaaatt 000240 000241 agaacaacat cagctcctcc ccaggtctcc acctgcacag ccctcaaacg ggaacgtcag ctcctccccg ggtctccagc 000320 000321 tgcagggccc taaaactaga acatcagctc ccgcctgggt cgctagctgc accaccctca aactggaaca tcagatcccc 000400 000401 atgggtctcc agctgcaggg ccctcaaact ggaacatcag ctccccacca gatctccagc tgcatggacc tcaaactgga 000480 000481 acatcagcaa cccgccgggt ctccagctGC ACTGCCTGca aactggaaca tgagctccct gccgggtctc cagctgcttg 000560 000561 gccctcaaac tggagcatca gctccccacc agatctccag gtgcatggcc ctcaaactgg aatatcagtt ccaccctggg 000640 000641 gctccaggtg cacagccctc aacctgcaac atcagctctc cactgggact ccagatgcac ggccctcaaa ctggaacatc 000720 000721 agctccctgc cgggtctcca gatgcacggc ctgcaaactg gaacatcagc tcccgtcagg tctccagctG CACGGCCctc 000800 000801 aaactggaat atcagctcca ccccggggct ccaggtgcac agccctcaaa ctgcaacatc agctctcagc caggtaccca 000880 000881 gctgcatggc cctcaaactg caacatcagt tcccccccgg gtctccagct tcacggccct caaactggaa catcagctcc 000960 000961 ccaaccaggt ctccagctcc acGGCCCTCA ACCTGCAACA TCAGCTCCCC ACCAGATCTC CAGATGCACG GCCCTCAAAC 001040 001041 TGGAACATCG GCTCCCCACA GGGTCTCCAG CTGCATGGAC TTAAACTGGA ACATCAGCTC CCAGgccctc aaacaggaac 001120 001121 atcagctccc aggccctcaa acaggaacat cagctcccca cagggtctcc agctgcatgg ccctcaaatt gcaacatcag 001200 001201 ttccccgctg ggtctccagc tgcaccgctt caaactgcaa catcagttcc cccctgggtc tccagctgca ccacttcaaa 001280 001281 ctgcaacatc agctccccgc tgggtctcca gcagcatggc cctcaacctg gaacatcagc tcccccgaac ccgggtctcc 001360 001361 agctccacag ccctcaacct ggaacatcag ctccccccaa cccgggtctc cagctCCACG GCCctcaaac tggaacatca 001440 001441 gctccctgcc gggtatccag ttgcacggcc ctcaaactgg aacatcagct ccccaccagg tctccagctg cacggccccc 001520 001521 tcaaactgga acatcagctc cccgccagCc tcaaactgga acatcagctc cctgccaggt caccagctgc atggccctca 001600 001601 aactgggaca tcacctcccc acgaggtctc cagctgcatg gccctcaaat tgcaacatca gctcccatca gagtctccag 001680 001681 ctgcatggcc atcaaactgg aacatcagct ccccggccct caaaccggaa catcagctcc ccgccggatc tccagctGCA 001760 001761 CAGCCGTCAA CATCAGctcc tccccgagtc ctcagctgca cgaccctcaa gttagaacat cagcttctcc ccaagtcttc 001840 001841 agctgcgtga ccctcaatct agaacatcag ttcttctctg ggtctgcagc tgcaagaccc tgaaactaca tcagcttctc 001920 001921 tccagttctg cagctgcaag accctcaaac tacaacatca gcttccctcc aggtctccag ttccatgacc ctaaatctag 002000 002001 aacatcagct ccttcctgag tctccaactg aaagaccctc aaagcgaaca acatcagttc ctccccgagt cttcagctgc 002080 002081 acgacactca atctacaaca tcagctcctg tctggttctc cagctgcacg accctcaaac tacaacctca gctcttcccc 002160 002161 gagtcttctg ctgcatgacc ctcaatctag aacataagct cctctctggg tgtccacctg tagggacctc aaattagaac 002240 002241 gtcagctcct cccagagtct tcagctgcat gaccctcaat ctttaacatc agctcctctc caggtctgca gctccatgac 002320 002321 cctaaaaata catgagcagc tcctccctga atcttcagct gtacgaccct caaactacaa catcagctcc tgtctgcacc 002400 002401 tccagctgca gagccctcaa actagaatat cagctcctcc ccgagtcttc agctgcacga ccctcaaact agaacatcag 002480 002481 ctcctgtaca gatttccaac tgtagggccc tcaaactaga acatcagctc ctccccgagt cggcagctgc aagaccctca 002560 002561 aattaccaac tcagctcctc ccggagtctt cagctgcatg accctcaatc tcgaacatca gatactctct gggtctgcag 002640 002641 ctgtagggcc ctcaatctag aacatcagct cctcccgagt cttcagctgc atgactctca aactagaacc tcagctcctc 002720 002721 cccgagtctt cagctgcacg acccttaatc tagaacctca gctcctcccg agtcttcagc tGCACGAccc tcaatctaga 002800 002801 acatcagctc ctctccaggt ttgcagaaga ccctcaaact agaacatcag cttctccctg agtcttcacc tgcatgaccc 002880 002881 tcaatctaga acatcagctc ctctgcaggt ttgcagctgc aagaccctca aactacaaca tcagctcctc tccaggtctg 002960 002961 cagctGCAAG Accctcaaac tggaacatca gctcctctcc aggtctgcag ctgcaagacc ctcaaactag aacatcagct 003040 003041 cctccctgag tcttcacctg catgaccctc aatctagaac atcagctcct ctccaggtct gcagctgcaa gaccttcaaa 003120 003121 ctagaacatc agctcctctc caggtctgca gctgcaagac cctcaaacta gaacatcagc tcctgcccga gtcttcagca 003200 003201 gcatgaccct caatctagaa catcagctcc tctctggatc tgcagctgca agaccctgaa actagaacat catcttctct 003280 003281 ccaggtctcc agttccgtga ctctaaatct agaacatcag ctcctccctg agtctccaac tGAAAGACCC TCAACGCGAA 003360 003361 AAACATCAtc tcctccccaa gtctgcagct gcaagaccct caaactagaa catcagctcc tccccaggtc tgcagctgca 003440 003441 cgaccctcaa tctagaacat cagctccacc ccaggtcttc agctgcacga ccctcaaact agaacatcag ctcctccctg 003520 003521 ggtctgcagc tggaagatcc actaactaga acatcaactc ctgtctgggt ctccagctcc atgaccctca atcaagatta 003600 003601 tcagctcctc cctgaatcac cagctgaaag accctcaatg tgaacaacat cagctcctcc ccgagtcctc aactgcacCA 003680 003681 CCCTCAAACT acaacaccag ctcctccccg agtcttcagc tgcaggaccc tcaatctaga acatcagctc ctccccgagt 003760 003761 cttcagctgc acgaccctca atctagaaca tcagctcctc tccgcgtctG CAGCTAGAAG ATCCACTAAC TAGAACATTA 003840 003841 GCTCCTGTCC AGGTCTCCAG CTCCATGACC CTCAATCAAG ATTATCAGCT CCTCCCTGAG TCTCTAGCTG AAAGGCTCTC 003920 003921 AATGCAAACA ACATTAGctc ctccccaagt cctcaacagt gcgaccctca aactagacca tcagctcctc cccgagtctt 004000 004001 cagctgcacg accctcaatc tagaacatca gctcctctcc aggtctgcag ctgcaagaac ctaaaagtag aacatcacct 004080 004081 actccctggg tctgcagctg gaagatccac taactagaac atcagctcct gtccgggtct ccagctccat gaccctcaat 004160 004161 caagaTTATC AGCTCCTCCC TGAATctcca cctgaaagac cctcaacgag aacaacatca gctcctccct gagtcctcaa 004240 004241 ctgcatgacc ctcaaactac aatatgagct cctcgccgag tcttcagctg cacgaccctc aatctagaAC ATCAGCTCCT 004320 004321 CTCCGTGTCT GCAGCTAGAA GATCCACTAA CTAGCACATT AGCTCCTGTC CGGGTCTCCA GCTCCATGAC CCACAGTCAA 004400 004401 GATTATCAGC TCCTCCCTGA GTCTCCAGCT GAAAGACTCT CAACGCAAAC AACATTAGct cctccccgag tcttcaacag 004480 004481 cgcgaccctc aaactacaac ttcagctcct ccccgagttc agctgcacga ccctcaatct agaACATCAG CTCCTCTCCG 004560 004561 CGTCTGCAGC TGCAAGAACC TAAGAGTAGA ACATCAGCTC CTCCCCGAGT CTCCACCTGA AAGACCCTCA ATGAGAACAA 004640 004641 CATCAGctcc tccccgagtc ctccactgca tgaccctaaa actacaacat cagctcctcg ccgagtcttc agctacatga 004720 004721 ccctcaatct agaacatcag ctcctctcca ggtctgcagc tgcaagaaca taaaagtaga acatcatctc ctccctgggt 004800 004801 ctgcaactgg aagatccact aactagaata tcagctcctg tccgggactc cagctccatg accctcagtc aagattatca 004880 004881 gctcctccct gagtctccac ctgaaagacc ctcaatgcga acaacatcag ctcctccctg agtcttcagc tgcacgaccc 004960 004961 tcaatctaga acatcagctc ctccctgagt cttcagctgc aacaatctaa aactagaaca tgagctcctc cctgagtctc 005040 005041 cagctGAAAG ACCCTCAACG TGAACATCAG ctcctccccg agtcctcaac agcgcgaccc tcaaactaca acatcagctc 005120 005121 ctccccgagt cttcagctgc atgaccctca atctagaaca tcagctcctc tccgggtctg cagctgcaag aacctaaaac 005200 005201 tagaacatca gctcctccct gggtctgcag ctggaagatc cactaactag aacatcagct cctgtccggg tctccagctc 005280 005281 catgaccctC ATTCAAGATT ATCAGCTCCT CCAAGTCTCC AGTGAAAGAC CCTCAACGCG AACAACATCA Gctccacccc 005360 005361 gagtcctcaa ctgcacgacc ctcaaactac aacatcagct cctccccgag tcttcagctg catgaccctc aatctagaac 005440 005441 atcagctcct ctccggatct gcagctgcaa gaccctcaaa ctagaacatc agctcctctc cgggtctgca gctGCAGGGC 005520 005521 CCTGAAGGTA GAGCATCAGC TGCTCCCCGA GCTAGAACAC CTGTCCCACC TGGATCTCCA GCTCCACGAC CCTCACAGAA 005600 005601 GAACAGCCAC ACTGGCTCCT TCATTGTCTT CAGCTCCACA ACCTAAGACA TCAGTGGCAG CACCGGCTCC TCCCTGGACG 005680 005681 TCCAGCTCAA CGACTCTCAT AGACTTAAAA GGCAGCACCT GCTCCTCCCC AAGGCTCCAA CTCCACCACC CTCGGATTTG 005760 005761 AACAGCGGTA GCACCACCTC CTCTCCAGGT CTTCAGCCCC ACGTCCCTCC CTGAACAATC CCTTCTTGTG AAATTCAGCA 005840 005841 GTCAAGAAAT CTGCAGCGAA AGTAAATGAA TAAATGTTTT GTTTTCAA |
Predicted Small Protein
Name | NONHSAT094287_smProtein_1637:1849 |
Length | 71 |
Molecular weight | 7402.3841 |
Aromaticity | 0.0285714285714 |
Instability index | 89.8657142857 |
Isoelectric point | 9.10296630859 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0361369773135 |
Amino acid sequence | MALKLQHQLPSESPAAWPSNWNISSPALKPEHQLPAGSPAAQPSTSAPPRVLSCTTLKLE HQLLPKSSAA |
Secondary structure | LHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLHH HHLLLLLLLL |
PRMN | - |
PiMo | - |