NONHSAT094312
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094312 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3546 nt |
Genomic location |
chr3-:195961240..195964785 |
Exon number |
1 |
Exons |
195961240..195964785 |
Genome context |
|
Sequence |
000001 CAGTCTCTTT CGTGCCATCT ACCTTCGAAG GAAGGAACAC TTTTAGAGTT ACAATGATGA GGAGAGGAGC GGGACAATAC 000080
000081 TCAATCCTAT ACCAAGTCGA TTGAGATTAG TTTCCTACTG GGAGTAAGTG CCTGGCCCTG CTACTCCTAT TTGAATGCTA 000160 000161 TTAATATTAC CTAGCCTTTT ACAAAGGATA CTTTGTAAAT GTCTGCTGTT GGAACTTGAT GTTAATCCAT TTTGGTCATA 000240 000241 GCCATATTAG AGAGATTTGC ACAGAATGTA AAGGCAAAAG CATAGGAAAC ACCTTCCTTT CTAAAGCAAC AGCCTTATCA 000320 000321 CCTTGACCTC TGTCCCTCTT CAGAACATTC TTCCCTGGAA CCAGTGCTCC ACATCTTTCT TTTCCTCTGA GAGCTGCAGC 000400 000401 TGGCAGGGAC CTCCCTCTGC TGCTCCTCCA GCAAGCCACA GAGCATACCC TCACGTGACA AGAGTGTGGT AGGTTTTCTC 000480 000481 CCCACTTTTC ACACACGCCT GGTGGTTGTG GTTCCATCTG CCTTGTTGGC TTGCCCGGGG GGATTCAACA CTTGACTTTC 000560 000561 AAATCAAAGA ATGCTAATGC TTAGCACTTG CTGTTGAGCA TGCTCTAACT TTTAAAGCCC TGGCCTCCTG TCTCCTTAGC 000640 000641 TGCTTAGCTA CGCGGCCTAG CAGATCATCA CCCATCAGTA ATCCTGTGGC TAGATCCAGG GGAAAATTGC TTATGTCCAG 000720 000721 GCCCCACCCC TGTCACTCAT AAATACCCCT TGTGGGGGTG GAATTTTAGT GTTTTCAGCT AAGAAAACCA CATTTTCTCT 000800 000801 TTCCTTGCCT CTGCTAGGAC TGTGAGCATC TCATAGTCCA CTCCCTAAAC ACTTTCTGGT AACACCTAGT TTTCCGCCTG 000880 000881 AGGGTCAGAG GCTAGAATCA TTGCCTGCAC AGCAGGACTA CCTTGGTTCT TAAAACTTGG ATCACCCAGG CAAGGCGTGG 000960 000961 TGGCTCACGC CTGTCATCTC AGCACTTTGG GAGACTGAGG CTGGTGGATC ACTTGAGGCC ACGAGTTTGA GACCAGCCTG 001040 001041 ACCAACGTGG TGAAACCCCA TCTCTACTAA AAATACAAAA ATTAGCCAGG CGTGGTGGTG GGCACCTGTA ATCCCAGCTA 001120 001121 CTTGGGAGGC TGAGGCAGGA GAATCCCTTG AACCCAGGAG GCGGAGGTTG CAGTGAGCAG AGATGGTGCC GCTGCAGTCC 001200 001201 AGCCTGGGTG ACAGAGCGAG ACTCTGTCTC CAAAACAAAA CAAAAACCAC ACACACATAC AGAAATAAAG AGAAATAATC 001280 001281 AACTAGAAAA AAAACAAAAC TTGGATCACC CAGAAAGAGC GTCACAGAGG CGAGGGAGAA TGAAGCCTCT TGTTATCCTG 001360 001361 ATCGCCTATG ACAACGACAT TTCTAACTCT TCTTTGAAGC GCAGTTCTTA CTCTTAAATC TGGTCATACA AGCTTTGGCT 001440 001441 TGGAATCCTG TCTGTCTTTG AAACAGCTGA AGTTAGTGTT TTCCTGTGTT ACCCAGTGTT ACATAGTCTC ATCTTTGAAC 001520 001521 TTTTCTGCGT CAGCCTTCTC TCTTTGGGAA TGCTGCCTGT TTCTGTCTAA CTTATTCTCC CTGGTGTGGT GTGGCAGTGA 001600 001601 AGTCTGTGCT GAAGCCCATC TGCTTGGTTC CTCCAAGTGC ACATTATGCA AGTGTATTTG GATAGACAGG GAGATGCCCG 001680 001681 GAACGTGGTT TTCCTCCTCC CTCCCTATTG GAGCCATACC TCCTAAATAT ATTGTCTGGG TCCCAAATGT TTGAGCCCTC 001760 001761 TTCCTCTGCT CTCAGTGGGC TGCTCTTGGC ATGCCCTGTG CTTGGAACGG GACCTGCAGG CTGACAGGCC TCTGAGACTG 001840 001841 CTAGGGCCAG CAAACGTACA TGTTATTGGG AAACTCCCTT TCCCCTTTTG GTGAGCTTCT ACCACCTCAG TCTAATCGTT 001920 001921 TTGACTGAAA GCTATTTGTC TGACTGAAAG CTAAAATCTT TTATAGTGTG GCCTGTTAGA TACTTTGGGG TAAATGTGGT 002000 002001 CTGAGGTGCT GGACTAGCAC GGGTAGATGG AGAAAGCTGT TGGGAAGTTG CATAATGTGG TCATCTGTGC CTAATTAAAT 002080 002081 GAGGTTAGAG GTGTGCACAC CACCACAATG CCTGGGATCT AAATCTTCAG ATATTAACGT TTGAGGCTAT GGAGCTGTTT 002160 002161 CCCTGAATCA CACACGAGAA AGCAGTCAAC ATGGGTGGGC CAAATGTGGC CAAGATGAGA GAGCCAGAAG TGTTGGCCTT 002240 002241 AGAGCAGAGC CTCTGTGTGT GAGACATTAG AAGGCCAGAG CCGGGGAGGT GCCGGCGCAG CCACTGCCTT CCGGTGGGCC 002320 002321 GGACGGAAAG CTTGGTCTTA TGCTAGATTC AGAAGCACTG AAGAATGGAG GTTGACACTT TAGAGGACTA GGAAGGGATC 002400 002401 ATTTGTGCTC TTGCAGCTAT TGCTGATAGC TAGAGCCAAA GACCATTATA TTGCTGAGGC TTGGGTAAGA AAGTTAGGGA 002480 002481 TGTGAGGAGG TTGAAAATCC TGAAGAAGAG AAAAAATATG AGGGAGGCTA AGGAAACTTA GCCACTTTCT GATCACTGAT 002560 002561 GACTCCTTAG GCTGCACCTG AGTGATGGTG GTGTTTTTGG AGGCTGTACC TGAGTGATGG TGGTTTTTGG GGGGCTGCAC 002640 002641 CTGAGCGATA GTGATTTTTT TTTGGAGGCT GCACAGCTGG TCAGACCATC TCTAGATGTT CTTTCCACAG TGGTTCATAG 002720 002721 GGCGTCATTC CCCCTTCCTG GATTATTTTG ACTATGGGTA GCTTATTTTC AAGAGCTCTT TGCCTTTTTA ATCCTGTTCC 002800 002801 AGATCACTTA TCCAAAATCT TTCCAAATCA ATTATATTTT GCTGCTTTTC TTTAATTCCC TAAAAGCCAT AGCTTCTAGA 002880 002881 TTTTCTATCA GCACACATTC TCACCAGAAG TTGAACCAAT ACAGGTAGAA AAAGAAAGCC CCCTTAATGT TTTTAACTGA 002960 002961 TGATATTTTT TTAAGCTTAC CAATATAAGT ATTTTTAAAG GTTCTATTTT TCAAAGTCAT AACAATGATT GTTCTTGTTT 003040 003041 TCTCTCATAG AATAGACTGC CATCGGATAA AGAGTGGTCC CTAGCTTCTA TTTTTCCAAG TAAATAAGTA GAACATGTTC 003120 003121 TTGGGATTAT ACCATTAAAT GTTAATTTTC TTGAAGAAGA AAGATTGTTG TCTGCCAAGA TTTTATGTTA GCGCTCGGAT 003200 003201 TGAGGCAGAA AACGGAAGCA CCAGGTTTAA CACTGGGATG ACTTGGGTTG TGTTCCTGGA GGTTTGAAGT GGGCCTTCCC 003280 003281 GCCTTTTGAG GGGGAAAACT GACTGTTTTG AACACATATC CTGGATTAGT TGGGTTGTTT TGTATTGAGG ATCCCTAAAA 003360 003361 GACAAAAGAG TCTTGGAAAG GACTGCTGGC TTCGTCTTGA ACGTTCGCCC CATCACCAGT GTGAGTCCGT GGGGAAGTCT 003440 003441 TCCTCAAGTG GGGTTCAGTC TGTAATTTTC CTGTCTGTTC TTAGTTTGTT CTGAGTTATT TTGGATTTTG TTCTTTAGCC 003520 003521 AAATAAAGGC AGTGTGGTTT TACCTG |
Predicted Small Protein
Name | NONHSAT094312_smProtein_218:325 |
Length | 36 |
Molecular weight | 3828.4448 |
Aromaticity | 0.0571428571429 |
Instability index | 62.0828571429 |
Isoelectric point | 8.84368896484 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0482751659222 |
Amino acid sequence | MLIHFGHSHIREICTECKGKSIGNTFLSKATALSP |
Secondary structure | LEEELLLLHHHHHHHHLLLLLLLLHHHHHHHLLLL |
PRMN | - |
PiMo | - |