NONHSAT094547
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094547 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2110 nt |
Genomic location |
chr4-:419562..421671 |
Exon number |
1 |
Exons |
419562..421671 |
Genome context |
|
Sequence |
000001 tccaggATCA AATATTGAAG ACTTTGTGCA TTCACTGAAG CGTCAGGATA TAGTTTTGGA AATAGATGAC CTCAGAAACA 000080
000081 GAAATGGCTC AGATGATCCC TCCTACAATG GAGCCATCAT AGTGTCTGGT GACCAGAAGG ATTAGATTTT CAGTTGCATG 000160 000161 TAATACCAAG AAATCGAATT GTTTTCCGTT CTTATGGGAA TTGTTAGCAA TGCCCTTATT GGAATTTTTA ACTTCACAGA 000240 000241 GCTTATTCAA ATGGAGAGCA CCTTATTTTT TCGTGATGAC ATAGTGCTGG ATCTTGGTTT TATAGATGGG TCCATATTTT 000320 000321 TGTTGTTGAT CACAAACTGC ATTTCTCCTT ATATTGGCAT AAGCAGCATC AGTGATTATT AAAAAAAGTT CAATCTCAGT 000400 000401 TATGGATTTC AGGCCTCTGG CCTTCAGCAT AATGGTGTGG ACAGGCTCTG GTGGACATTC CATTACACTT CTTGATTCTC 000480 000481 CTTTCAATAC ATTTAATTTA CTACTTCTCA TTTCTGGGAT TCCAGCTTCC ATGGGAACTC ATGTTTGTTT TGGTGGTATG 000560 000561 CATAATTGGT TGTGCAGCTT CTCTTGTATT CCTCATGTAC GTGCTTTCAT TCATCTTTTG CAAGTGGAGA AAAAATAATG 000640 000641 GCTTTTGGTC TTTTGGCTTT TTTATTGTCT TAATATGTGT ATCCACAATT CTGGTATCAA CTAAGTAAGA AAAACCCAAC 000720 000721 TTAATTTTGT GCATGATATT CATACCTTCC TTTACTTTCC TAGGATATGT CGTTATTGAT CCAGCTCAAC TTTATGTATA 000800 000801 TGAGAAACTT GGACAGTCTG GACAATAGAA TAAATGAAGT CAATAAAACC ATTCTTTTAA CAAACTTAAT ACCATACCTT 000880 000881 CAGAGTGTTA TTTTCCTTTT TGTCATAAGG TGTCTGGAAA TGAAGTATGG AAATGAAATC ATGAATAAAG ACCCAGTTTT 000960 000961 CAGAATCTCT CCACGAAGTA GAGGAACTCA TACCAATCCA GAAGAGCCTG AAGAAGATGT TCAAGCTGAA AGAGTCCAAG 001040 001041 CAGCAAATGC ACTCACTACT CCAAACTTGG AGGAGGAACC AGTCATAACT GCAAGCTGTT TACACAAGGA ATATTATGAG 001120 001121 ACAAAGAAAG TTGCTTTTCA ACAACAAAGA AGAAAGCAGC CATCAGAAAT GTTTCGTTTT GTGTTAAAAA GTGAAGTTTT 001200 001201 GGGATTACTA GGACACAATG GAGCTGGCAA AAGTACTTCC ATTAAAATGA TAACTGGGTG CACAGTGCCA ACTGCAGGAG 001280 001281 TGGTGGTGTT ACAAGGCAAC AGAGCATCAG TAAGGCAACA GCGTGACAAC AGCCTCAAGT TCTTGGGTAC TGCCCTCAGG 001360 001361 AGAACTCACT GTGTCCCAAA CTTACAATGA AAGAGCATTT GGAGTTGTAT GCAGCCGTGA AAGGACTGGG CAAAGATGCT 001440 001441 GCTCTTAGTA TTTCATGATT GGTGGAAGCT CTCAAGCTCC AGGAGCAACT TAAGGCTCCC GTGAAAACTC TATCAGAGGG 001520 001521 AATAAAGAGA AAGCTATGCT TCGTGCTGAG CATACTGGGG AACCCATCAG TGGTGCTTCT AGACGAGCTG TTCACCGGGA 001600 001601 TGGACCCTGA GGGGCAGCAG CAAATGTGGC AGATACTTCA GGCTACCATT AAAAACCAGG AGAGGGGCGC CCTCTTGACC 001680 001681 ACCCATTACA TGTCAGAGGC TAAGTCTCTG TGTGACCGTG TGGCCATCAT GGTGTCAGGA ACGCTAAGGT GTATTGGTTC 001760 001761 CATTCAACAG CTGAAAAGTT TGGTAAAGAT TATTTACTAG AAATAAAAAT GAAAGAACCT ACTCAGGTGG AAGCTCTCCA 001840 001841 CACAGAGATT TTGAAGCTTT TCCCACAGGC TGCTTGGCAG GAAAGATATT CCTCTTTAAT GGCATGTAAG TTACCTGTGG 001920 001921 AGGATGTCCA CCCTCTGTCT CAGGCCTTTT TCAAATTAAA GGCAGTGAAA CAGACCTTCA ACCTGGAGGA ATACAGCCTC 002000 002001 TCTCAGGCTA CCTTGGAGCA GGTGTTCTTA GAACTCTGTA AAGAGCAGGC GCTGGGAAAT GTTGATGATA AAATTGATAT 002080 002081 AACAGTTCGA TGGAAACTTC TCCCACGGGA |
Predicted Small Protein
Name | NONHSAT094547_smProtein_401:637 |
Length | 79 |
Molecular weight | 8648.1359 |
Aromaticity | 0.115384615385 |
Instability index | 41.7487179487 |
Isoelectric point | 7.82501220703 |
Runs | 13 |
Runs residual | 0.0329893683552 |
Runs probability | 0.0703123938417 |
Amino acid sequence | MDFRPLAFSIMVWTGSGGHSITLLDSPFNTFNLLLLISGIPASMGTHVCFGGMHNWLCSF SCIPHVRAFIHLLQVEKK |
Secondary structure | LLLLLLLEEEEEEELLLLEEEEEELLLLHHHHHHHHHLLLLLLLLLEEELLLLLLHHHHL LLLHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHH HHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTT TTTTTTTTTTiiiiiiii |