NONHSAT094577
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094577 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1708 nt |
Genomic location |
chr4+:574545..578300 |
Exon number |
2 |
Exons |
574545..576019,578068..578300 |
Genome context |
|
Sequence |
000001 CATTTTAAAT TATTAATCTT CACCATGTTA TTTCCAAGAA CAATCACGAT TGATCTTTCA GTTACACAGC CACGGTGTGT 000080
000081 GCCTCTCTGT GTAACTCTGC ACAGCTGGTG ATTTACTGAA AGAACTTACT CTCATAAAAC CACAGCCAGC GAGTTCTCAG 000160 000161 AGACACAATA ATGCACCTTA ATTATGAGtt taaaagctct tgtcttgtga aatgtaatcg atccacagaa aaatcataaa 000240 000241 gtatacatgt aatagcttaa tgacttataa atgaagatct gtatacttcc cactcgaaaa acggaatatt gcaggatttg 000320 000321 agtacacaac ccgtaccttt ccaacgacag cctccctccc accagagctt ctgctgagtt cacttgaaat cacttccttg 000400 000401 catttattta tacttttatt accttgaggt gcatccctaa ccattctagt tcgattttgc ctggtgtttg aactttatat 000480 000481 taatggaatc ataggacata attcttatat ctctggtttc tttcattcaa ctttgtgtct gcgaaatgta tccatgttgc 000560 000561 atgcaacggg ggctcattca tcgctggtta ctgattcact gcatgagtat gacacagttt attaaccatt tcactgctga 000640 000641 tgaacatttg atcatttcta gtttgggaat attattaata atttttgaac cttcttattt gtgtgccctg atgtacatgg 000720 000721 acatgcattt taggggtgta tacttaggga aattgccggt tcatgagtaa cacctatctt caggtattac tTTTTGTGCC 000800 000801 CTtttatgct gaactacaat ttacgtgcaa taccaatcat tcatattaag tgtacaactc agtgagttta gacaactgga 000880 000881 caccttgttg tgagtcacca ccaccgagat gatccagcac tgtcccaact ccccccaagt tctcctttgc aggcaccctc 000960 000961 tccctccatt ctgggcacag gcaaccatga accactatct gtcaccgtag ctttagtata aaatttcaca tacatggact 001040 001041 cagggagcat agagtctttc ctgtctggct tctttccgct ggcaaaatgc ttggagactt ttccacgttg ctgcatgaat 001120 001121 caatggatca tttgttttcg tggctgagca gaattccacc aacatttgtt tactcatcca tgaaatgatg gacatttggt 001200 001201 gtttttccat tgagattgtt atgaataatg ctgctattgt cattcaagga caagtcttct gtgaacatct gttttcactt 001280 001281 ctcttgggta catccttaga agtggtattg ctggactgta tcaaaagtta atatttaact ttcaggaaac ttacaaactg 001360 001361 ttttccagag tggctgtacc attttgcatt cccagaccga agtgtgaaag ctccagatgc cccacgccct caccagccca 001440 001441 cggtgttgtc agccttaata gtgctgacca ttctgcctgt taatatgatg aattacactg attcagtttc aaatgtccaa 001520 001521 ccaagcttgc actccagaga tgaagcccac ttgatcacat ggattattct tttaatatat gatggatacg acttggctgt 001600 001601 tcttttgttg aggatttttg tgtttatgtt aatgaggata ttatttgtag ttttcttttc ttgtaatgtt tttgtctttg 001680 001681 ttcagtgtca gagtaatgcc aacttcat |
Predicted Small Protein
Name | NONHSAT094577_smProtein_545:769 |
Length | 75 |
Molecular weight | 8744.4798 |
Aromaticity | 0.121621621622 |
Instability index | 58.5297297297 |
Isoelectric point | 6.56402587891 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0497984615631 |
Amino acid sequence | MYPCCMQRGLIHRWLLIHCMSMTQFINHFTADEHLIISSLGILLIIFEPSYLCALMYMDM HFRGVYLGKLPVHE |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHLLLEEEELLHHHHHHHHHHH HHLLEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiii |