NONHSAT094739
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094739 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2753 nt |
Genomic location |
chr4+:1741078..1743830 |
Exon number |
1 |
Exons |
1741078..1743830 |
Genome context |
|
Sequence |
000001 tttgaagaca aacttggagt tcactatatt taacaCTTAG GACCCCTAGT ATCTGCCACT GGGCTGCGGG GGCAGCTGCA 000080
000081 GGGACACACA CCTGTTGGGT GCCTGCTGGT TCCACCCAGG AGCACAGCCA GCAGCCTCAT GCCTCCTGCC CCCTGGCAGT 000160 000161 CGGGTGCACG TGGAGCAGGT GGCCTTGGCC TCGACAGGGT TCCCAGGGTC CCACTGGAAG CCCCACATGG AACTGTGCCT 000240 000241 CTGGGACATT GCTCCAGGGA CCTCGGGTGC GGGCTGGCCC CATCCTGTGG GGAGGTCCTG GGAGGGTCAG TCTGGCCCGC 000320 000321 CTGCCTGCTG ACTTGGGTGT GGCCTGAGCA GGTAAAGGCG ACACAGGAGG AGAACCGGGA GCTGAGGAGC AGGTGTGAGG 000400 000401 AGCTCCACGG GAAGAACCTG GAACTGGGGT AAGGAGGCCC CGTCTCCTGT cctccccgtc cccatccccc tcgccatcct 000480 000481 tgtccccatc cccctcgcca tccttgtccc catccccctc gccatccctg tccccgtccc catccccaCC TGGCCTGGGA 000560 000561 CCGCTGGGCA CCCGAGGCAA TGGCTGTGTG TCTGTTCTCC TCCCACAGGA AGATCATGGA CAGGTTCGAA GAGGTTGTGT 000640 000641 ACCAGGCCAT GGGTGAGTGC CCGGGCCACC GAGGCCACGT GCCTCCACGA GGGGCTGCCT ATGCCCCACC CTGGCCCTGC 000720 000721 CCTGCACCCT GCCTAGGACC CCACCCTCCT GAGGCCCCTT TTCCTAACAC ACGAGTCCCT TCAACATGGG CCCGGCCGTG 000800 000801 GAAGCACTGA GGCGAGTTGC GGGGAAGCTG GTGGTAGTGA GGCTGGTGGC TCCCACGGAG CCAGGGCTTG GCAGGCCCCA 000880 000881 CAGTTGTGCA GATGCTGAGC TAGCAGTGGG GCTGTGGTGG GAGCAGAGTC TGTCCCGCCG TGGCCTACCC CACTCCACCC 000960 000961 TGCCCTCGCC GTGCGGCTAT GTCTAGCAGC AGCCTCTGTA GGTGTCTGGC AGGACGGGAA CACCAGGCCT CATCTGGCCT 001040 001041 CCCAAAAGCT TGGGCTCCTG GAGGTGCTAC TGTGGGGATC TGTCTTAGGC TGAGTGTCAG CCGGCGGCAG GTGACCGCCT 001120 001121 GGCCCTTGCA GTCCCTCCAG GACCACCACG AAGCACGACG CACATCCTGG AGCTCGCCAT ACCGGCTCCC AGGCCTCACC 001200 001201 CTAGGCTCTA GGGTGTTGGG CGCCGCCTCT TCAGGGACCT CTGGCCCAGG CTCCAGTTCC CTGCGGATCT GATGTGGAGG 001280 001281 AAACAGCTGT TTCCTGGGCT TTGCATCCGG CCTAGAAGAT CCTGGGTGGA GGGACCCATC ACCCTCCGAG GCTCACACCC 001360 001361 ACTGCCCACC TCTCCTCCTG GCGCTCGAGT CCCTTGCCTC ATTCCTTGGG CTGTCTCTGG CACCCATCGT TTCGGTTGCC 001440 001441 TCCTCATCCT GAACGTTTGC TTTTCTTTTC TCAAGAGGAA GTTCAGAAGC AGAAGGAACT TTCCAAAGCT GAAATCCAGA 001520 001521 AAGTTCTAAA AGAAAAAGAC CAACTTACCA CAGATCTGAA CTCCATGGAG AAGTCCTTCT CCGACCTCTT CAAGCGTTTT 001600 001601 GAGAAACAGA AAGAGGTGAT CGAGGGCTAC CGCAAGGTAT GTCTCCGCCA CCCTGGTGTC CTCACCTCGG AGGCTGATGG 001680 001681 ACTCATGGTC CAAGCCAGCG GGGCTACAAG CTGCTGTCTT TGCACCTTGG TCCTTGGCCA AGCCTCCCCT TGCCACGGGG 001760 001761 GCATGGGATG ACCTGTGAAC GAGACAGGGT GCAGGAGTCA CAGCATAGCT GGTTTGCGAG GCAGCTGAGG GCGGCAGGAG 001840 001841 GCAGAGTGAG CAGGGAGGCC ATCTGAGCCG TCCGCTGTTG TGTGACAGAC GACTCGGCTA TGATCAGGCA TCTGTGAGAT 001920 001921 TTGAGACAGC GCTGGTGCAC CGGGGCCTGG GGCACCTCGG AAAGGTGTCT GGGCTGTCCG AGCGCTTGGG TCCCAAGGGT 002000 002001 TGGGGACCCA GGGCATGCAG TATCCAAGGC GGGAGGCCCA CTGAAAGGTG GTCACGGCTG TGCAAGGCCA CCCTGGTGTC 002080 002081 CTCCTGGCCA CGGGACTCTG AGCGCCCCCC ACCTTCTGTG CTGGGCAAGG CCCACATGCT TGCTGGAAGG AGGGATGTCT 002160 002161 GGGCCATCCA TCTGCCCAGA GCAGGCCTGG AAGGTGCCTG CGAGGCCGCC AGAGGGTTCT GCCCACAGCA GCAATGTTGG 002240 002241 AGCGGAGGTG CTCAACGCCT CCTGTGGAGG AGCTGGACCT GCAGGTGCAG CTGGAAGAGG GGCTGTCACT GTTGGTGCAA 002320 002321 GGGGGTTGGG GACACCAGAT GGGTCccctg ggagtcagac taaactggaa aagcggccct tgcagggcct gctgagccac 002400 002401 acctcatctg agtcctgaag tcaggtgggt gtcagtggct ggggcccagc tgcctaacag aagcaagcct gaatactcta 002480 002481 gggaagaagg tatcttatgc tttaaattgc tgctgcagtt ttaaattagt gtctggcaca gaataaccaa gtgtgaaagg 002560 002561 aacaggaaac atgagtgaaa atcaGACCCG TTATTAGAGT GAggcatggt gatgtacacc tgtggtccca gctactaggg 002640 002641 aggctgaggt gggaggatca tttgagcccg ggaggtcgaa gctgcagtga gccatgattg tatcactgca cccccagcct 002720 002721 gggcaataga ccaagacccc catctctaaa att |
Predicted Small Protein
Name | NONHSAT094739_smProtein_1271:1528 |
Length | 86 |
Molecular weight | 9902.8172 |
Aromaticity | 0.117647058824 |
Instability index | 60.8082352941 |
Isoelectric point | 12.008972168 |
Runs | 10 |
Runs residual | 0.0188948306595 |
Runs probability | 0.0556527115351 |
Amino acid sequence | MWRKQLFPGLCIRPRRSWVEGPITLRGSHPLPTSPPGARVPCLIPWAVSGTHRFGCLLIL NVCFSFLKRKFRSRRNFPKLKSRKF |
Secondary structure | LLLLLLLLLLEELLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLEEELLLLLLLEEEEE HHHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT TTTTiiiiiiiiiiiiiiiiiiiii |