NONHSAT095089
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT095089 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1999 nt |
Genomic location |
chr4+:8358049..8360149 |
Exon number |
2 |
Exons |
8358049..8358702,8358805..8360149 |
Genome context |
|
Sequence |
000001 TGCTGGTATA AGAAATCTCC CCTGTGCAGA GCATGTCTCA GCAAGCCACT GGGACCAACT CACGCACAGT GATGCATGTG 000080
000081 CACGGATGGC TGCCACGGAG CAGAAGCCTT GATCTCTCCA TCTCTCAGGA GGAAGTTTGC TAAACTTGTA CATTCATGTT 000160 000161 ACTTGACTGG GAAAATGGCT GTGCCATCAC TTTAAGTGGA AAAAGATGTC CACAGAGTAT GACCCATTTC TGAAAGGAAA 000240 000241 ACCACACACA CGTACACAGA GGAAGAAAGT GTGCAGAATG GTGTACGCTA ACATGATCCC GGCAGGTGAG AGGAAGAAAG 000320 000321 TGTGCAGAAT GGGGAACACT AACCTGTTCC TGGCAGGTGA GGGGAAGCAA GTATGCAGAA CTGTGCACGC TAACATGATC 000400 000401 CCAGCAGGCG AGAGGAAGAA AGTGTGCAGA ATGGTGCACG CCAACATGAT CCCAGCAGGT GACAGGAAGA AAGTGAGCAG 000480 000481 AATGGTGCAT GCTAAGATGA TCCCAGCAGG TGAGAGGAAG AAAGTGTGCA GAACGGTGCA CACTAACATG ATCCCAGCAG 000560 000561 GGGAGAGGAA GAAAGTGTGC AGAACAGTGC ACACTAACAT GATCCCAGCA GGCGAGAAGA AGAAGGTGAA GTGAGCAGAA 000640 000641 TGGTGCATGC TAAGATGATC CTGGCAGGTG AGAGGAAGAA AGTGAGCAGA ATGGTGCATG CTAAGATGAT CCCGGCAGGT 000720 000721 GAGGGGAAGA AAGTGAGCAG AACGGTGCAT GCTAACATGA AGCCAGCAGG TGAGGGAAAG GAGAACAGTG CACACTAACA 000800 000801 CGTTCCCAGC AGCTGAGAGA AAAGTGGACA CCAGGGCCAG GAGACGGGGG CCCTCGAGGG GAATGCAGGG AGGACTCTGG 000880 000881 GGCAGGGGCA AATCACTGTC AATGTTCAGC TTCAGTGCTG GGTGCAGGAA CACTGGCATG AACCAAGGAG TACAATGAAT 000960 000961 CAAATTCTGG GCCCCTGTGG CCCAAaagta aatcaattaa attggagggg caactatttc tccatgtgga gttataagtg 001040 001041 atatctattt tcatctttaa agttttctac attaccaaaa tagtacctaa taatcacgtt agttttacaa tcagaaaaCG 001120 001121 GTGGCAGCAA GCAATGACAT TAAACTGAAC ATTTTTATTC CAATTATTCA AGTTTTTGCT GCACAGTATT TTCAAATGTT 001200 001201 TTATTTTCAA AATGACTATT ACAAAAAATG TAGTTTCCAG AATGTCATGG CTACACCTCA ACCTACTCCA CTCTTGCAGT 001280 001281 GGGGGCAACA GCTTTAGGAG CAGGGACCGT GTGTGGGGGC TGCACCCTTG CAGTGCGTGG CCTGGACACG GCCCAAGCCC 001360 001361 TCCGCCGCCC ACAGACAACA CTTTCACATT GATAAATATG CATGCCCATC AAATCCTGCt gtaaaccaaa actaaaattc 001440 001441 taagtccccc agccaactga gtgcatcccc ttgcagccac cgggacccaa agaaacctga aaaaccagtt caggccatga 001520 001521 atgggaagga gggctcggga tgccccatta tacctgcccc gctctggaat ttagacacaa ctgaccaaca ttaaaataaa 001600 001601 aacagagatc ctagactgac aaaacagact ctctgtagca ataagatacc caattcaacg ggactccggt atagcatcac 001680 001681 atgacacata gtagccccga aggaatcaaa gtattttacc tcaaaatata tttccttgac atatgttgaa atggcccttg 001760 001761 caaagctgtc tctcatgggg gaaatgtgca ttctgcagag aatctgcttc ccttattagg ctttttctgg agactctgac 001840 001841 accttttaag ggcctataag agacatgcac atctattctc tctgaagcct gccatccgga ggcttcatca acataacaaa 001920 001921 aaccttggct tccacaacca cccccgcccc caccttaact caagctgagt tcaacttttt agacaaagct taactcttt |
Predicted Small Protein
Name | NONHSAT095089_smProtein_1211:1423 |
Length | 71 |
Molecular weight | 7826.9175 |
Aromaticity | 0.0714285714286 |
Instability index | 56.4985714286 |
Isoelectric point | 9.68511962891 |
Runs | 8 |
Runs residual | 0.0305516265912 |
Runs probability | 0.0222796325738 |
Amino acid sequence | MTITKNVVSRMSWLHLNLLHSCSGGNSFRSRDRVWGLHPCSAWPGHGPSPPPPTDNTFTL INMHAHQILL |
Secondary structure | LEEEHHHHHHHHHHHHHHHHHLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHLLL |
PRMN | - |
PiMo | - |