NONHSAT095820
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT095820 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2751 nt |
Genomic location |
chr4-:24897087..24899819 |
Exon number |
2 |
Exons |
24897087..24897100,24897110..24899819 |
Genome context |
|
Sequence |
000001 CTATCCTTGC CTGGGCTTTG GGAAAACCCT TCCCCGGGGC TTCAGAGATG CTCCTGCAGA GGGAGGTGAT GTGTCAGCTG 000080
000081 CTGACTGTCA ACATGATGCC ATGGAAAAAT CATATTGATG GGGCGCAGAT TGCTGTGCCT GCTTGCTCTG CCATCTGCAG 000160 000161 ACCCCACGAC CAAGGCAGTA TTGGAGGTGG CAGGGATGGG ACTCTCTCTC ACTAGCCAGT TCCAATTTGC TTTCTAATTT 000240 000241 GCTCCAACCT GGTGAGTGCT GCTGGGGTCA ATCTGTAACC TTTTCTTCCT TCCCAACATT CTCTGGCTTT GCCAGACTTT 000320 000321 GCAGCATGCA TGCAGGCTGC TCAGTCAAGC CTGGGCAGCT GCCATTTCTG CGGCCTCTTC TGAGAACCTC CTAGTTACCT 000400 000401 TCTGACTTCG TACGCCTCTT ATTGTGCCCA AGTCCGAACT CATGCCCAAA TCCAAACTCG TGCCCAAATT GTTCTGCCCC 000480 000481 TCTTCATTCA TACCCCTCTC TGGCCTTCAG AGCATCTGCT GGCTGCTCTC CTTTGCTGAT TTGCTGGGGT TTGAGTAAGC 000560 000561 CTTTTATTAA GCTGTTTTCA GTGCTTAGGG AAGAAGACTG CAATTGCTCA CAAAGAACTC ATAGCAACCT CTCTCTGGGA 000640 000641 TTTTTGCAGG CCTCCTCAGC ACCCTCCCTA CCTCCTGTGT CTCCTTGTAC CTTTCCATTT CATTAATTAC TGCCTGATCA 000720 000721 AGTCTCTGGA AGCAAAACTC TGACTGTGAC CCTTCCTCAC TCACAGACCT CCATAGCTCC CGTCAGCTCT CATGTTGGCC 000800 000801 CAAACTCTGC TGTCATTTAA GGCCTTTCTT ACTTTCATCC AAACCAAACT TTCCAGACTT ATTTTGACTT TCTCCTTTTC 000880 000881 ACACATCCTG CACTCCTGGA AAACAACCAC TTCTATTTCT GTCTGAAGCG CATGCTGCCA CACACCCAGC CTTTGATCAG 000960 000961 GCCGTGCCTT CTGCCTGGAA CTCTTGTTCT CTTCCTTTTT CTTACTTCTC TCTCAAGGTT CAGTCACAGC TCTCTTGCCC 001040 001041 CCAGACTAAA AGCCCTCCTC CCCTTCTGTG ATCTCACAAC ATCTAGCCAT GCCTCTCTGA CCGCGTGTCT CCCTGGCCGC 001120 001121 CATGGGTTGG ATTTACATGT GTTTGTGCCT TGCCTGCAGC TTGGAGTTGC TCTAGTGAAG GAACTGACCA ATTCATCTTT 001200 001201 GAATCTCTCA CTGTGACCAG CACAGTGTCC TGCATATAGT GGAAAAATCT AAAAGAGATG ACAAACCTCA TGGTTTCTCA 001280 001281 GTTAATACTT AAATTGAAAA ACTACTGAAT TAACACGAGG ACGTTGATTT TTTTTTTCTT TTGGTCCAAA CAACATTCTC 001360 001361 ATCTGTTTCT TTCCCCAAAG TCCCTTTGTA TCCATTTTTA TCCCACAGAC ATGACTTTCA AAATATAGAT TGTGATCTTT 001440 001441 TCAAGGTAGT AAGTCAAATC ACCTTTTAAT AAGCTCTAAG GGATTTATGA ACTTACTGTA AGTCAATTCC TTCCTCCCTC 001520 001521 CCTTCTTTAC CTTCCTTCCT TCCAAACTGG AATTTTATTA TCTCAGATAT ATTGCTTGAA AAAAGCCAGG CAGAGGCTGT 001600 001601 GGGTGGGAAA TCATTTGGTT ATAAAGAGCT ACTTTCTGTA ATGGGATCTG ACCTGTATTA TAGCGTGTCT GAACATACAC 001680 001681 CAGGCTTTAA CTCTCTTCTG CTCTAGAATT CAAGCTTGCT CCAAAGGTTA TTTGCTACCC ACGGTTGACT CTCATGCAAT 001760 001761 TTCTTTGGCC CCTATGGTCT TCTCATTAAG AAAAATAATG ATAAAAATAA TTCTTTACAT TCGTCTTTCT TCAACTGGTA 001840 001841 TTTACAAGGA TTTACTGTGT CTCAGGCACT CTGCCAAAAG TTGGGGTATA CAGTCCACCA GGATGTAGTC ACCTTACCCC 001920 001921 CCATTTCCTT ATGGAACCCT CATAACAAGC TTGTGGATTA GACTGAGCAG GTGGTAATGA CCTCATTATA TAAACAAAGA 002000 002001 CATGGTAATT CAGAGTGTTC GTGAAATGCT CAGAAGTTCA GCATCCTTCT TTATGGTCAC TCAGCAAGAA GCAAGCAAGA 002080 002081 GGAGCTCGGT TTTAACTTCC TGTTGGATGT TTTTCCCTCT GGACCCCAGG TTTGTGCTGG GAACCCTGGA TTCAGGCGCC 002160 002161 CTGCATGCTC ACTTCCAGAC AAGAGGCGGC AGCCCTTGCA TGCTGCAAGA CCGCTTTCCT CATCTCTGCT TCTGCTAACC 002240 002241 TGATCTAAAC CCAAGAATGT GAGCTGAAAA GGAGACTTTT GGGGTCTGGT TCTAGATTCC TGCCCAGACT TCAGTATAGG 002320 002321 CTGGAAATTG AGCAACAGTG GGCTAAGGAG TCCTCAAGAG TGGGGTCAGG TCATCCTGAA GGGATGGTCT CATAGCCCCT 002400 002401 CTGTTGTGGG AGCCTGAAGA CAGGTGCACC AGGTGACCCA GTCCTGTCTG AGCAGAGGCT CCAAGAAAGT GAGATAATCT 002480 002481 AGTGACACCT CAGACTCACC ACCCCACCCC ATGCCCATTG TAAAGAATTT CCTCAGGCAG CCATGAGGGA CATGCCCCAG 002560 002561 ACTGCCTGAG CCTGTGAATG AGGAAAGGTT TGAGAAGAAA GTGAATGACT GAAGGTGTTA TCTAGAGATG AGAAATGCCT 002640 002641 TGGGTAACAG TGGATTTTAA CTTTAAACAC CGAGCAATGT AAATTCACTG CACCCTCCAA ATTTAGAAAA AAATTAATAT 002720 002721 AAAGAAAAAC AAATAAAAAT ATATTTAAAG C |
Predicted Small Protein
Name | NONHSAT095820_smProtein_47:214 |
Length | 56 |
Molecular weight | 5958.8995 |
Aromaticity | 0.0181818181818 |
Instability index | 49.2 |
Isoelectric point | 6.79888916016 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0496883438061 |
Amino acid sequence | MLLQREVMCQLLTVNMMPWKNHIDGAQIAVPACSAICRPHDQGSIGGGRDGTLSH |
Secondary structure | LLLHHHHHHHHHHLLLLLLLLLLLLEEEEELLLLLEELLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |