NONHSAT095934
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT095934 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1673 nt |
Genomic location |
chr4+:30729935..30731607 |
Exon number |
1 |
Exons |
30729935..30731607 |
Genome context |
|
Sequence |
000001 AGAGAGAGAG CATATATATA TATTCTTTAG TGGAAATGCA TCTACATAGT GATGCCAACC ATAGCTTCCA GTGCTCATTC 000080
000081 TGTAAGCATA ATTTTTACAA TGTTTTTCTC CTGTCTATAA CCAAGGATGT TTTCATAAGG CACAATGAAT CTGCATATGT 000160 000161 TGTAATTTCC GTTACATTTG GCCTGATACC ATAGGCAAAA CACTAATAGC TGATGGAAGT TAGGCTGTGT CTTTAGTCAT 000240 000241 CTAGTAAAGC AACACTATCT GGATCTCTGG ATGTCTATGA AATAAGGAAA AGGTCATCCA TTGATTTGAT CCGCAATGAA 000320 000321 TTTGCAAATT TATATGGAAG TCCACATGAT TATTTGAATC TTATCCAAAA CTTATCCTAA ACCAATTAAT GACTTAGATG 000400 000401 TAAGACCACA AAGTCAGTTT AAATATTTTA ATGAGCCATC TAGTACAATA AATATGGCAA AATCATTTTT TCTTATCCTT 000480 000481 CTATCTTTGA GTAATTACAT ATCTCGTATG TGGAAAAGTG TGAACATGGT TTATATCACA AACTCTGTAC ACACAGAGAC 000560 000561 ATATACACAC ATATTAGTGT ATACCATTTA TAGCTGTATT AGTCTTTTAT TTAGTCATGA TGTTTATAGA TTAATATGTG 000640 000641 AAAAATATCT GAGCTTAAAC ATACACAATG TTGAAATAAA ATATACTATA ATCAACAGCT TAATGACTGT ACATGAAATC 000720 000721 ACTAGCATCA TCACATTTTA GAATTACAAG GTGTCAAACA GTCCCCTCAT TTTAATAGAA GAGGAGACTG AGGCCCAGCA 000800 000801 TGAAACAGTG ACTTGATTGG GATTACAAAA TTGTCAGGGA TATAATGTGG ACTAGAGTCC AAGTTATGGA ATGTAGTGTC 000880 000881 CAGTATTCTT ATTTATCTGA TCATACTACC TTTGGGGGAA AAAAACTGAA TTTCTGTAAC TTTCTGTGTG TGTATTTCAA 000960 000961 TTGCAGTAGA AATCTGTTGA AATTTACTTA CTTATTTATG ACTATATATT TGGCTATGAA GATTGACATC TTTACAATAG 001040 001041 ACTATAATTC TGCTTTAGGC TCCAGTTCTT CTGTGTAAAA TTATCTGGGA AAATATAATT CAAAATTTAC AGAATTTTAA 001120 001121 AGAAGTTAAT AATTCTTTTC CCTCATGTAG GATTGTAATT GATAACATAG AGTAAAGCAT CTTAACATGG TTAAGAACAT 001200 001201 ATATTCTGTT GACAGAATTT TTAATATTAG CAGAACAATG ATAACAGACA TAAGTTCCTT CCTAGCAATT AGTATATTTC 001280 001281 AATAAAAATT CATTTAAATA GAAAAGAATT AAAACATTCT ACACATTATG TATGAAACTT TTTATGCATT CTAATTGTGA 001360 001361 TAATCTTTTA CCTTTTTCAT CAATATTGAT AATTACTTTT GACTTCTGGG CTTGTGTGCA TTTTATCAAC TTTGCACATA 001440 001441 CATTTTATTT TAGTAGCATC CTTAACACAC AGTCATGCAC GAATGTTTTC TCTTAATTTG TTTTCTAGCA AGTTTTTAGA 001520 001521 AGAATATGAC ATTTTGTTAA CTTTCAATTG GATTGCTTCC TTGTTAGGCA GTTAACCAAT CTACTGTACT AGATTCTAAA 001600 001601 TTTGCACAGT GATAAAATAT AAATTATTGA ATCTATTAAT TTTAAAGATA AAATCTGAAC TATTTTAAAA ACT |
Predicted Small Protein
Name | NONHSAT095934_smProtein_1331:1495 |
Length | 55 |
Molecular weight | 6315.2562 |
Aromaticity | 0.203703703704 |
Instability index | 65.5242592593 |
Isoelectric point | 6.20123291016 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0412078745413 |
Amino acid sequence | MKLFMHSNCDNLLPFSSILIITFDFWACVHFINFAHTFYFSSILNTQSCTNVFS |
Secondary structure | LEEEEELLLLLLLLLLLEEEEEELHHHHHHHHHHHHHHHHHHLLLLLLEELLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooooooooo |