NONHSAT096007
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096007 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2827 nt |
Genomic location |
chr4+:36507665..36510491 |
Exon number |
1 |
Exons |
36507665..36510491 |
Genome context |
|
Sequence |
000001 ATAGGGCCAT GAAAGAAGAA TGTTAAAAGG TGTTTCATGT ATAATGAAAT CCCCCTGGAA ATAATATCAG ATGAACTAAG 000080
000081 GGACTATGTA AATCAACTTT CACCTGATGT GCATTGCCTT ATTTTTAATT ACCTCCTTCT GTAGGATATC ATGTGTATGG 000160 000161 AATGTTTTCA GAAAGCTAAA GAAAGCAATG TCCTTGTATC TGAGAGTTGT GAAGGTTGTG GGTCCTGTGC AGAGTGGTGG 000240 000241 TGAAAATACA TCCCAAGTGG CTTTACAGAT TTCCAGTTTT CCAACACTTT AATAAGATGT CAGACATCAA ACAACTACAT 000320 000321 GGCCTTCACC CTAGATACCT TGAGAGGTGG AGAGTACAAG ACCATGAGAC ATTTAGCATT CTAGGAGTCC TAGAAGCTTT 000400 000401 GCAAGCATAT CCAAAGTTAC TAGATGTGGA AACCTCTCAT TTGTAGTTGG CAGAGTCCAT TTGgacaaat atggcacatg 000480 000481 ttctgtaggt tacctacagc aTAACCTACT GCCGCTGTGG GTTATATTTT AGGGAAATTC TTGTAATGAA TGATGAATCA 000560 000561 TTTCTGACTC CTCCTGAAAA TAAACTGAAA ATTTCTATGA GATCCAGAAT AAAAACTTCA TGTTTAGTAG GGGTAAATGT 000640 000641 TCCTGAAATT CTTTATAGTT CAACCCTCAG ACACCTCTAT TTGGAGTAGT TAAAAGTTAC TAAACCACTG CTGTTTAAAA 000720 000721 GCTTTCTGTG CATCAGCTTA AGATCTTTCA TCATGAGGAA ATGTAAAGGA CCCTTAAATT CCTGAAAATA CATCTTTTTA 000800 000801 GTAACATATT TAGCCTCTTC CTGAAACTAG GAACACCTAG AAATGGTTCC AGTTCCTTTC ATTGTAGGTC TCATCTGATA 000880 000881 TGTAATTGGA GGCAGTTAGA GATCACATGA TTTTAGAAAT TTGTGCAGTA TTGTTTGGGG AGTTTGCAAA AATGCTCTTA 000960 000961 AAAAAGATCT TAGTTCTTCA CCCTCACTGC CCTGTAGCTT ACATAAAGTT TGAATCCAGC ATTCCTGAAC CAACAGTTAT 001040 001041 GTCTTTTTTT TTCATTAAGA TGTCAGAGTT GAAGTTCTAC AAGTGTGAAA CCCACCATCT GGGATATGTA GATGAGTGAG 001120 001121 CTGCAGAGCA GAATGGCTGA TGCAGATCTG GTAAAGTATG GTTTGACTGA TGTGGTAGAA TATCCTGGTA TCATCATCAT 001200 001201 TATAGGAATA AAGGTAATCA ATGAAGTTTT TCCTATATCA AATATCTGTA ATTTATAACT GTCTTATCTA TATAAACCAT 001280 001281 ACTATTGGAT CTCAGACCAC TCGAGATGGA ATTGATTGGT TAATATCAGC CTAGTTCAGT GCCATATACT GAAGCCTGAT 001360 001361 TCCTTCGGCC AGTTTATTGA ATTGTTGCCC AGTTGGAGTT TATTTGACTG GACTATATTG TTTCGTCAAC CACTCAAGGG 001440 001441 CTATACTTGA GTTTGCTTTA GTGCAGGCAT AGGAATTTGG GTTTCCTTGG CCCTTGTTAG CAAATAGATC TCCAAGAGTA 001520 001521 ACAACGATAA TAATGCCCAG AATAATAATG CCAACATCCC AAGACAACAA TTGCCATCAC AAAGATAACT CAAATGAGGA 001600 001601 CAATGACTTT CAGCAAGACC TGCAACCAGG ACAGCAGCAG TTTGCACCTG ACACGTTGAA TGAGATGGAA GACAAGTGCA 001680 001681 AGAAGATGGA GAGGTGGTGG CTGAGAGTGG AAGTAATACT CCAGCTAATA GGCAATTATT TTTGTGAATA CTAATGAGAA 001760 001761 ATAAGCAGGA CCCAGTAGTC TTCAGTATGG AGTAAAACCA ACATCAGTTA CTGTTCATTA TTCAGAGTGA TGATGAAAAA 001840 001841 GACAACCTAG AACTTCAAGA AGTCTGGACT CTTAAGAAGG GTGCTTGTCA ATTACTCTGA GCTTAAATTA CAAATCAGAG 001920 001921 AGTCAGTATA GTCCATAGCA TTGTCAGACG TTGCCAAAAC AAAGTCACAC CATGCCATGA AGCCGAAGTA GATGGCAGAT 002000 002001 AACCCCATCA GTGTCAGTGA TCCTGTGATA AAGGGTGACC ATGTGCATGT CTTTGTATTA AAATCCAAAA ATCTTGTGGA 002080 002081 AATAATTATG ACAAACTATG AAGTCACAGA TCTAGTGCTG AAAAACTGTT TCAAGATGAG ATTCATTCAT ATTATGAGGC 002160 002161 ACAAGTTACT GAAACATCTA AAAATAGAAA ATGCACAAAT TGTAAATTAA TTTGACTATG TACAATACAA AAAACTAAAT 002240 002241 ATGGATTACA CATTAGACTA GATACTAAGG ATGCCTCCTG AAAGAAATCA TATCATATAC CTATGCCCAA TGTAGCAGGT 002320 002321 AAACGCACTA CCTTTGGAGC AGAAGTTATT CAGTGGTCTC TACCCCTGTC TATCATATCT GTATTATCCA TGAATTCAGT 002400 002401 AACCCTCCCA ATATCTGGAA CAAAGAGTGG ATTTGCAGCT GAATAGACAC AATAGAAAAC ATCAATCAAG CATTTGTTAA 002480 002481 GTATGAACAC TTCCATGAAG CCACTTAAAA TGAAGATCAC TTCCCTTTCA CTGCTCCTGA GTACCCCTGG GAATGAAAAA 002560 002561 TGTATATTTA GAAAGTGCTG TGGTTGGAGC TTCCTGGCTG AGGTCACTAT AGCTGCAGAG TCCAACAGCT TTGCCTATAT 002640 002641 GAATTTGAAA ATAGTGAAGC GAACACCGTC CATGCTCCTT GAAGGAAACT ATCTGTAGAT TTTTGTATTA AAATAATAGA 002720 002721 AGAAGAAATT CCTAAGACCC AGCCCATGAA AATGGTCATG AGCAAGTGGT GGCAATTTGC ATCCAATATT GTGTTAATGC 002800 002801 AGAGCCAATT GAAATGACTA CATTTGA |
Predicted Small Protein
Name | NONHSAT096007_smProtein_1532:1753 |
Length | 74 |
Molecular weight | 8818.7722 |
Aromaticity | 0.0958904109589 |
Instability index | 75.2945205479 |
Isoelectric point | 4.60369873047 |
Runs | 7 |
Runs residual | 0.0482545293858 |
Runs probability | 0.0127438362732 |
Amino acid sequence | MPRIIMPTSQDNNCHHKDNSNEDNDFQQDLQPGQQQFAPDTLNEMEDKCKKMERWWLRVE VILQLIGNYFCEY |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHH HHHHHHHHHHLLL |
PRMN | - |
PiMo | - |