NONHSAT096104
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096104 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2262 nt |
Genomic location |
chr4+:39699759..39781612 |
Exon number |
7 |
Exons |
39699759..39699922,39739040..39739133,39747372..39747430,39757277..39757359,39776454..39776553,39779302..39779430,39779980..39781612 |
Genome context |
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Sequence |
000001 ATTTTGGTGG CCGGGCGCGG AGGTGATTCC ACACTGAGGC GAGCGCGGCG GCCGGGGTGG TAGTGGCAGT GTTCGTGTGC 000080
000081 TCAGGTCTGA ATCGCCGAGg gaggaggcgg tggaggaaga ggtggcggcg gtggcggtgg tcgtagcggt ggcggaggag 000160 000161 gcggACGAGC AAAAATCAAA TTAAAGTAGA TCTTGTAGAT GAGAATTTTA CAGAATTAAG AGGAGAAATA GCAGGACCTC 000240 000241 CAGACACACC ATATGAAGGA GGAAGATACC AACTAGAGAT AAAAATACCA GAAACATACC CATTTAATCC CCCTAAGGTC 000320 000321 CGGTTTATCA CTAAAATATG GCATCCTAAT ATTAGTTCCG TCACAGGGGC TATTTGTTTG GATATCCTGA AAGATCAATG 000400 000401 GGCAGCTGCA ATGACTCTCC GCACGGTATT ATTGTCATTG CAAGCACTAT TGGCAGCTGC AGAGCCAGAT GATCCACAGG 000480 000481 ATGCTGTAGT AGCAAATCAG TACAAACAAA ATCCCGAAAT GTTCAAACAG ACAGCTCGAC TTTGGGCACA TGTGTATGCT 000560 000561 GGAGCACCAG TTTCTAGTCC AGAATACACC AAAAAAATAG AAAACCTATG TGCTATGGGC TTTGATAGGA ATGCAGTAAT 000640 000641 AGTGGCCTTG TCTTCAAAAT CATGGGATGT AGAGACTGCA ACAGAATTGC TTCTGAGTAA CTGAGGCATA GAGAGCTGCT 000720 000721 GATATAGTCA AGCTTGCCTC TTCTTGAGGA GCACCAACAT CTGTTATTTT TAGGATTCTG CATAGATTTC TTTTAAACTG 000800 000801 GCATTCTTGC CTAATGATGT TATCTAGGCA CCATTGGAGA CTGAAAAAAA AAAATCCCTG CTCTGTAAAT AAAGCTAATT 000880 000881 AAACGTCTGT GTAAATTTAA AAAGGGGAAA TACTTTAATT TTTTTTCTTA ATAGTGTAAA AATTCCCTGA GCTAAGCTAA 000960 000961 AACCATGGAA GAAACATGCT ACTTTAGTGT TTAGCAGTGT ACCAAGACTA GCAAGAGTTT GCTTCAGGAT TTTGTTGAAT 001040 001041 AATTAAGATA ATATTTTGAG TGTGTCAGGG CCATTCAAAT TGTTGGTGTT GCATCACAGC TACCTTAACT GTTTTTAACA 001120 001121 TGGATCCTCT GTGCCTGTGA ATTTACTTGC ATGCTTGTAC TTGACTTCTT AGGATGGGTA GCTGAAAAGA CCACCATTTT 001200 001201 AAGCATTTGA GAATTCTTAA ATATGAAATT TATTCAGAAT TGAAGATGGT GACCTATTCA GAGCCTTTTT GTCCTTGTCA 001280 001281 ACAGACTGGG ACAGTGTCTG ATTCCCCCTT CACCCCCCCC ACCCCCGCCT TGCCACACAC AGCTAATATT CTAATGGTAA 001360 001361 ATTTCTCTGT ATCAGGTGGG GAAATGTGCT GAAGGACAGT ATGTATCCCT TGCTTCATTT TTAGGTCGTA GGTTTGGAAT 001440 001441 GTCTTGTCCC AGTTCTTCAA ACACTCTTAA ATTTTTCTTA AGTAATGTAA AAATGGAACT GCCAATTTTA TTTCTCTTGC 001520 001521 AAAAATAGTA AATACTTGAT GTTACATTAT TCCCAGGTTT AATGAAAGAA CCCAACTTAG TTTTTCAGTG AATTTGACAC 001600 001601 CTATTTTTTA GTGATGAAAT TTTTCTTTGA GAACTGGCAA GGATGCAGTC AGCTGTTTGC AGTTTTTAGC CTGATTTTGG 001680 001681 GGTCTATAGA GATTGCTTTA TTGGATACTT CAAGTCATTC TTGCTTGCAC TTCCCCTATT GACACATGAA AGCTGTGTTG 001760 001761 GTGTTTTATT GTACATACTT CAGATGCACA TAGGAATAGA AGTGTGTTAT AAATCTAGCT TTCTTTATGA TGTTTCTGAT 001840 001841 AATACGAGAA TTGAAAACTT TACCTTCTCT TGTACATAGT CAGACTATTT GTATTAAATT TACATTTCAT TCTAAGTTCA 001920 001921 AAAGTTTGAA AATTATTAGT TTTGCAAGAT CACACACTAA TGTAACCATT TTATGAAGGT TGAAGTGGAT TTATGCAGGC 002000 002001 AGTTCTATAT ATAGAAATAC AATTCTTTTT AAATTTTTAG GACCAATACA AAATAACAAA AATGTAATGG AATCAGACTG 002080 002081 AATTAAAGTA AGGCTGTATA TTGAAAGTCA TATTATAAAA GGTTTGCTTT CTTTAAGTGT TATTTATCTT AAATTATAAT 002160 002161 CGTTAAATGT TTGGAAGATA ATTTTTGAAT CATAACGTCA GCATAACTTC ATTTGACTTC TCAATAATCT TGATACTAGA 002240 002241 AGCAATAAAA GAACCATTAT TA |
Predicted Small Protein
Name | NONHSAT096104_smProtein_410:703 |
Length | 98 |
Molecular weight | 10667.0592 |
Aromaticity | 0.0721649484536 |
Instability index | 44.1164948454 |
Isoelectric point | 4.93609619141 |
Runs | 13 |
Runs residual | 0.00248186330661 |
Runs probability | 0.0481431657902 |
Amino acid sequence | MTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYT KKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN |
Secondary structure | LLHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLHHHHHHHHHHHHHHHHLLLLLLHHHH HHHHHHHHLLLLLLEEEEEELLLLLLHHHHHHHHHLL |
PRMN | - |
PiMo | - |