NONHSAT096221
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096221 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3015 nt |
Genomic location |
chr4+:44018877..44024095 |
Exon number |
2 |
Exons |
44018877..44019387,44021592..44024095 |
Genome context |
|
Sequence |
000001 CGCAGAAAAA CGAGGGGTTG CAACTGCCAC GCAGCAACTG CCACACAGAA GAAGGAGGGA CTGCAACTGC CATGCAGCAA 000080
000081 CTGCCACACA GAAAAAGGAG GGGTTGCAAC TGCCACGCAG AAAAAGGAGG GGTTGCAACT GCCACGCAGc aactgccacg 000160 000161 cagaaaaagg aggggttgaa aagggagtag cttctgatat tcagtaagta cgaatcggcc ttaggttccc tgcctcaaga 000240 000241 ccctattctc ctgcctcaCt tttagctaag ggttattaca aaagagtcag aaagttaaga caaaatatga aagtttataa 000320 000321 agtaaaaaga gttacagtga gctaagtata acttattgaa aacatttttt taatttagta tagcctaact gtgtttatac 000400 000401 agtctacagt agtatacagt aatatcctag acctccacat tccctcgcca ctcactcact cactcaccga ctcactcaga 000480 000481 gcaacatcca gtcctggaag ctccattcac aaagacattg gatttattaa aaatgacacc aaaggtagga taaaaattgt 000560 000561 ttaaatgcct tttaattttg tgaggaatct agaattctat acctagccat gttttcaatt aaatgtgagg gtggagtagg 000640 000641 gacattttca aaccttacaa cattttctct cttgcacatt ttctcaggaa gctattggaa gagatgctca aagaagaaaa 000720 000721 aattaccata atccaataaa gaagaagacc tgagatccag gaagcagatg atctgaactg cagagaaagt tcaggaaagt 000800 000801 tccctcattc atgatgatgg gaaataacag taaattctgt acagcagtct tggacaacaa ccaatctaaa ctggcacagt 000880 000881 gcagaggcaa tcaacagaga acataatatt gatagaatgc ctgacgcttt tgattgtatt cacaggaaac ataaacaatt 000960 000961 ggaagacagt ttatgaatga attagtgata agcaTTtttt ttcaactttt attttagatt caagggtaca tgtgcaggtt 001040 001041 tggtgcctgg gtatactggg tgatgctgag gtttgtgtta caaatgatcc catcatccag gtactgagca tggtatccag 001120 001121 tagttagttt ttaacccttc tcctgtctct ctcctggtgg tccccagttt ctactgttgc catctttatg tccatgagta 001200 001201 tacaatgttt agctcccact tgtgagaaca tgcgtatttg cctatttaat tatttgttta tttgttgaga catagtttca 001280 001281 ctctctagcc cgatcttggc tcactgcaac ctacgcttcc tgtgttcaag cgattctctt gcctcggcct ccccagtagc 001360 001361 tgagattaca ggcacctact accatgcctg actaattttt gtattttaat agagataggg ttgcaccctg ttggccaggc 001440 001441 tggtttcaaa ttcctgatct caagcgatcc actcaccttg gcctcccaaa cggctgggat tacaggcttg agccaccacg 001520 001521 cccagccact atttgctttt ctattcctgc attaatttgc ttaggataat agccctcaac ttcatccatt ttgctgcaaa 001600 001601 gaaaataatt ttgttctttt ttagggctgc atagtattcc atggtgtata tgtaccacat ttgttttatt taatccactg 001680 001681 ttgatggaca cctgggttta ttctatgcct ttgctactac aaatagggct gtgatgaaca tgcaaaggca tgtgtctCCT 001760 001761 TGAGataaat attttaaaaa tacaataaaa tcaaaaaaat taatGTCAGG GCTAACATAC AGTTATTAGA AAAAAAAATA 001840 001841 TTTTGTTATT ATAGATAGAC ACTAGCTTTA acataataat agttatgtaa gtagtcgaag ttcatatgat caaaattatt 001920 001921 atttagctgt tttaaaagaa tgcagatata agagatatac cattaatggt gaatagttcc agtaaaagca agctaagctc 002000 002001 tctttcacat tccatagagg gaatttaata agccctgaaa ccgaaagttc aagaaGGAAA AGTGCAAGTC CTACATGAAT 002080 002081 TGATCAATGA TTGCCTCTGG AAATTATTGG TGTGAATGGG GAGGCAAAAT TGCTAGTTTG GTTAATAAGC TATGTAACTG 002160 002161 TTTGATAATT CTTCACTTGC ATGTAAACTT CGGTACAAAT AAAAGCTAAT GAAAACAGAG ACAGAATTAT TAAATCATCA 002240 002241 TAACATAAAG TTAACATTTT TCATCATTTT TCACTTGTTC AAAGATCATA AGAAATTTTC ATCTTAATTT TCAAGCATCA 002320 002321 ACTAATGTTT CTACTCTCCC TGAGTACCAT AAAAAGCCTT CTGTGGACAG TCTAAGTGAC AATGACACAT TAGATTTGGC 002400 002401 AAAAATTACT TTCAGATGTA AATCAATTTG AGAATGAACT GATGCTCTGA AACCGGAATT TACTTGTTGC TCAAATTTGC 002480 002481 CCCAAAATAA AATAATTTTC AATCATAGGA GAATTCACAG GGCCCAGCTC TCCATTGGTG TTCCAATCTA TTCTCTGACC 002560 002561 TCTATGCTGT ACACAAGAAT CCTCAATGGT TTTTCTGGAA CCCAAGACAG AAATAATATC CCAAATGATG CTTGCTCTAA 002640 002641 GAGTATCACT CACCCAGGGG GTTTACCCCC TGCAACTTTC CCTTTTACCA GTTTTGCTAC AGATTTTTAT GAACTTAGTT 002720 002721 CCCCAGTCAC CAGGGCCACA GATGTTTGAA ATACTTTTCT GTCTTTTTTT TTAAGTGATA AACAACTGAA TTCCTATTCA 002800 002801 CTTTTACTCC ACGAGTGACT TTACAATACA TTAAAAAAAG ATAAACTGTC AGTATTCTTT TCTTTAAAAA CTGTAAAATG 002880 002881 CCTTTCCACT TATTTCTTAT ACTATGTTGT CTCTCAGATA ATACATTGAT GCAATTTTGG ATAATGTTTT AATGAAGAAG 002960 002961 TTGACAGTAA TGCACATTAA TTAAAATATG TAAAAATCTA TATTCATAAC ACGAC |
Predicted Small Protein
Name | NONHSAT096221_smProtein_2585:2773 |
Length | 63 |
Molecular weight | 7115.6549 |
Aromaticity | 0.112903225806 |
Instability index | 74.0064516129 |
Isoelectric point | 4.78338623047 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0244558283774 |
Amino acid sequence | MVFLEPKTEIISQMMLALRVSLTQGVYPLQLSLLPVLLQIFMNLVPQSPGPQMFEILFCL FF |
Secondary structure | LEEELLLHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHH HL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooo oo |