NONHSAT096797
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096797 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2367 nt |
Genomic location |
chr4+:71558338..71561459 |
Exon number |
2 |
Exons |
71558338..71560274,71561030..71561459 |
Genome context |
|
Sequence |
000001 caaagtgctg ggattacagg cgagagccac cacccccagc cGCATCTTTC AAAATTTGTT ATGTATattt aacaaacatt 000080
000081 taaagagcac tgagatgtgc tgggtactgT CATTTGTACA TGAATAAGTT GTTAACCAAT GTGATAATCT TTTTTTGTAA 000160 000161 AAACTCACTT TGTGAAGACT GGAGAGCTTC ATGGGTAAGA GTTCCAATAA AGTACATTAC TGGTAGCAGG CATCAGTACA 000240 000241 AAGCATCAAC AACCTGTTAG TTTTATGGCA GTATATTAAA CTATAGACAG CTATGAAAAA TACAAAATAT TAAAAATTAA 000320 000321 AGTAGAAGAA AACATCAAAT TAGTGATCCA CTAAATAGCT AGTGATGCAT TTActctgcc actaatcagc tgactggctt 000400 000401 tgggccaatt tctctaagcc agtttcttac ctataTTCTT ACCTATGAAG AAGTTAAATA AGATCAACAT GCCACTTTAA 000480 000481 TTTTTGTGTA GAAGTAAATT TTATTCGCTT CTCAGACCTC TAAGAACTAC CTAATGGTCA AAGTTTTTGG CAAACTGGAA 000560 000561 AATTACTTTT TGTGATCTAA AAGATAAAAT CTAGCTTAGA TAACTTGAAT AATTAATTTG ATTCACGTAT CTTACACAAA 000640 000641 ATATTTGATA TATCTGAGGA ATGGCTGGAG TTGCTATGAA ATAAAATAAT TTTAAGTTAA CGTGTTAAAT TATACAAGTT 000720 000721 AACATTACCA GAATAATTCA AGAAAAGTGG AACTTAGTAT GCTTTACATC TTGGAGATCA CAATGATGAA CAGGTACTGA 000800 000801 ACAGGAACAC TGAATTATAG ATGTTACCAA AAAAAATCAT GTTTCTAACT AGAATTTAAA ATCACACTGg gccgggcgcg 000880 000881 gtggctgatg cctgtaatcc cagcactttg ggaggctgag gcaggcagat cacaaggtca ggagttcaag accaacgtgg 000960 000961 ccaacatggt gaaaccccat ctctactaaa aatacaaaaa ttagccaggc gtgatggccc acgcctgtag tcccagctac 001040 001041 tcaggagacc aaggcaggag aatcgcttga acccgggcgg cagaggttgt ggtgagctga gatcgtacca ctgcactcca 001120 001121 gcctgggcaa cagagcaaga ctgtctcaaa caacaacaac aaaaaTCACA CTGAAAAAAA AAGCTGCTTC AGCTAATCAG 001200 001201 ATTGTATTTT TTATTCTTAA AAACAAAATT ATAATTTGCC TTTGAAAGTT TAAAAAACAG AAACAggcag agtacagtga 001280 001281 ctcatgcctg taattccagc acggcaggag gctcaggcag gcagatcact tgaggtcagg agttcgagac cagcctggtc 001360 001361 aacatggcaa aaccccatct ctactgaaaa aaaaaaaatc agccgggcat ggtggtgcac tcctgtagtc ccagctactc 001440 001441 aggaggctga agcaggagaa tcacttgaaa ctgggaggga gaggttgcag tgagcactca agcctgggca agagtaagac 001520 001521 tacgtctcaa aaatagaaaa aaaCAGTATA GAACCTTTAT ACCCCCCCCC ATCAACAAAT ATTAGTCTGT ATTTTTTCAT 001600 001601 TTTGTTTAAG ATATATTTTC TCATAGCTGA GTTTTTAATT GGTAGTTACT TTAGCTATGT ATTCCAGATG ATATATTTTG 001680 001681 ATTCTTTCAG CTATTCTTAA AAAATAAAAC CAGTGATTTT ACATTTGCTA CAAAGTGAAG TTTTAAATGA TAGCAAATAT 001760 001761 CAAGAATCAA CATTTGTTAA ACTACAAAAC AAAAAGACCT GGAGGAAACT AGTAAAATGT TCTGCTTTAA GAAAGCCAAT 001840 001841 AGggccgggc gtggtggctc acgtctgtaa tccagcactt tgggaggttg aggcgggtgg atcacctgag gtcgggagtt 001920 001921 caagaccagc ctgaccaaaa aaaaaaaaaa aaaaaCTAAT TTAgccaggt gtggtagctc acacctataa tcccagcact 002000 002001 ttgagaggct cagataggag aactgcttga acccaggtgt tcaagaccaa cctgggccac ataaaacatt aaaaaaatta 002080 002081 gctgggcatg gtaccacacg tgcctgtagt aacagcttct tgggaggctg aggtgggagg actgcctgtg cctgaggagg 002160 002161 tggaggctgc agtgaggcat gatggcccca ctacactcca gcctgggctg cagagtgaga cccggtctta aaaaGCGAAT 002240 002241 TTACTCCACT TGAATGAGTT AATTTCTCTT AGGTTCTACC ATAATGGttc ttttgtttgt ttgtttttgt ttttgagacg 002320 002321 gagtctcgct ctgtggccca ggctggagtt cagcggcgca gtctcgg |
Predicted Small Protein
Name | NONHSAT096797_smProtein_1283:1492 |
Length | 70 |
Molecular weight | 7775.6697 |
Aromaticity | 0.0579710144928 |
Instability index | 72.6188405797 |
Isoelectric point | 9.17974853516 |
Runs | 13 |
Runs residual | 0.0490744726647 |
Runs probability | 0.0340045928282 |
Amino acid sequence | MPVIPARQEAQAGRSLEVRSSRPAWSTWQNPISTEKKKISRAWWCTPVVPATQEAEAGES LETGRERLQ |
Secondary structure | LLLLLHHHHHHLLLEEEEELLLLLLLLLLLLLLLLLLLLEELEELLLLLLLLHHHHLLLL HHHHHHLLL |
PRMN | - |
PiMo | - |