NONHSAT096930

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT096930

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1902 nt

Genomic location

chr4+:76481258..76491103

Exon number

5

Exons

76481258..76481359,76481751..76481794,76488445..76488555,76489324..76489462,76489598..76491103

Genome context

Sequence
000001 ATCAGGTTCA ACGCAGTGAC TGCTCAGTAG AAGCCATGGC TCGCAGACAC TGCTTCTCCT ACTGGTTACT GGTATGCTGG 000080
000081 TTGGTGGTAA CTGTGGCAGA AGCACTGTCC ACTTTCTATC TCCAGCAGCA TATTAATTTG CACATGccag gatggtctcg 000160
000161 atctcctgac ctcgtgatct gccagcctcg gcctcccaaa gttctgggat tacaggcatg agccacagcg cccggccAAA 000240
000241 ATCCGCACAT CTTAAAGGAC AAGAAGAGGT ATTTACGCCT CCTGGAGATT CACAAAATAA TGCGGACGCT ACCGACTGCC 000320
000321 AGATCTTTAC ACTCACCCCT CCACCTGCCC CGAGGAGTCC GGTCACAAGG GCCCAGCCCA TCACAAAGAC ACCCAGGTAT 000400
000401 TTCCCCAGAA GAAGACTCCA GAGAGGAAGC TCATCTGAGG AAAGCTGAGA GGGAAGAGAA ACCCAAACAT ACTGAAGCAA 000480
000481 AAAAAAGCCT ATCCTTCAGA AAAAAGCAAC AAAAAGATTT CTGTTTTATC TTTCGAAACT AAAACTATTG GATTTGAAGA 000560
000561 TTAAGTATCC TAAACATCAC TGACTAGAAA CTGTTCTCTT TGTCAGCAGT GAAGATATTG GATCATAGGT TATTGATGGT 000640
000641 TGCAAAATTG GACAATAACC ACGTTATTTT TATCCTCAAC CTCTTATGGT CACAGGATAT TTATGCAAAT AAAATCTTTA 000720
000721 AATGGGTGGC TCTAGTAATT CCTATCCATA CTAAGATGCT GAGAGAATCC ATCTCCTCCT CTAAATTAAA CAGGATTTAA 000800
000801 ATAAATTGAG ATCATTATAA ACCACACGAA GAAACTGATG ACACCGTTTT TATACTcatt ggaaaacata cagagcaagg 000880
000881 tgcattgaca aagtaaactt taaaagaaat tataaagctt aaagcaatta aaaagttatg aggagtctga ctgtagctaa 000960
000961 tactttaaag ATATAAACTG ACTTGTCTAA CCCaaataat aataattatt attattttct tggagacaga atttcactct 001040
001041 tgttacccag gctggagttt agtggtgctg tctcggctca ctgcaacctc tgcctcccgg gttcaagcaa ttctcttgcc 001120
001121 tcagcctccc aagtagctgg gattataggt gctcgctacc aagcctggcc aattttttgt atttttagta gagatggggt 001200
001201 ttcaccatgt tggccaggct ggtctcgaac tcctgacctc aggtgatcca cccacctcgg cctcccagag tgctgggatt 001280
001281 acaggcatga gtcactgcgc ccagccCCAA ATAATTACTT TTAAACTATA GTATCTAAAT TTACTTTAAT GTTGACTTCA 001360
001361 ACTGATGCAA ATTAATTTGA TAATTTTCTC ACTGTTTCCC GTTATCATTA CATAGATGCT GGCTAAAATA ATATACTTCC 001440
001441 TCTCAAACTT TTAACGTAAT TCCAGGTTCA AAATGCCTGA TTAAACTGCT ACAAGAATAT TCTGGTACCT CTAGAACTCC 001520
001521 ACAGAGATAA GTTCACTCAA CTCTTGGAAC CTTGTATTCT CAGGGTGCAA TATGAGAAAC AAATCCCACA GATTGCATTG 001600
001601 ATTGGTTATT TGTTTTGGCC ACTCTGTAAA ACACATCTTC CTGTTTATGC CACTTATCTT GCCTGTAACA TAAGAACTTT 001680
001681 AGTTCTGCAT ATGTGGTCAG TGGTTTGCAC TTTTTCCTCC CAAGATCTAC ATGCAAAAGT TGCTGTTGCT GCTGCTGCTA 001760
001761 CAAAAACAGA AAAAAAAAAA TCAGGATGAA GACATGAAAG GACTTTGGGA ATGGTTGCCC TAAAAAAGGA AAGAGAGATA 001840
001841 AAATCATCAT GCTATGTTTC TTTGCTTTAT TAAAATGATC AAAAAAGAAA AAAACTATTT AA
[back to top]

Predicted Small Protein

Name NONHSAT096930_smProtein_299:541
Length 81
Molecular weight 9327.4738
Aromaticity 0.05
Instability index 79.27375
Isoelectric point 10.4164428711
Runs 9
Runs residual 0.0263157894737
Runs probability 0.0390488527743
Amino acid sequence MRTLPTARSLHSPLHLPRGVRSQGPSPSQRHPGISPEEDSREEAHLRKAEREEKPKHTEA
KKSLSFRKKQQKDFCFIFRN
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLHH
HHLHHHHHHHLLLEEEEEEL
PRMN -
PiMo -