NONHSAT096930
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT096930 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1902 nt |
Genomic location |
chr4+:76481258..76491103 |
Exon number |
5 |
Exons |
76481258..76481359,76481751..76481794,76488445..76488555,76489324..76489462,76489598..76491103 |
Genome context |
|
Sequence |
000001 ATCAGGTTCA ACGCAGTGAC TGCTCAGTAG AAGCCATGGC TCGCAGACAC TGCTTCTCCT ACTGGTTACT GGTATGCTGG 000080
000081 TTGGTGGTAA CTGTGGCAGA AGCACTGTCC ACTTTCTATC TCCAGCAGCA TATTAATTTG CACATGccag gatggtctcg 000160 000161 atctcctgac ctcgtgatct gccagcctcg gcctcccaaa gttctgggat tacaggcatg agccacagcg cccggccAAA 000240 000241 ATCCGCACAT CTTAAAGGAC AAGAAGAGGT ATTTACGCCT CCTGGAGATT CACAAAATAA TGCGGACGCT ACCGACTGCC 000320 000321 AGATCTTTAC ACTCACCCCT CCACCTGCCC CGAGGAGTCC GGTCACAAGG GCCCAGCCCA TCACAAAGAC ACCCAGGTAT 000400 000401 TTCCCCAGAA GAAGACTCCA GAGAGGAAGC TCATCTGAGG AAAGCTGAGA GGGAAGAGAA ACCCAAACAT ACTGAAGCAA 000480 000481 AAAAAAGCCT ATCCTTCAGA AAAAAGCAAC AAAAAGATTT CTGTTTTATC TTTCGAAACT AAAACTATTG GATTTGAAGA 000560 000561 TTAAGTATCC TAAACATCAC TGACTAGAAA CTGTTCTCTT TGTCAGCAGT GAAGATATTG GATCATAGGT TATTGATGGT 000640 000641 TGCAAAATTG GACAATAACC ACGTTATTTT TATCCTCAAC CTCTTATGGT CACAGGATAT TTATGCAAAT AAAATCTTTA 000720 000721 AATGGGTGGC TCTAGTAATT CCTATCCATA CTAAGATGCT GAGAGAATCC ATCTCCTCCT CTAAATTAAA CAGGATTTAA 000800 000801 ATAAATTGAG ATCATTATAA ACCACACGAA GAAACTGATG ACACCGTTTT TATACTcatt ggaaaacata cagagcaagg 000880 000881 tgcattgaca aagtaaactt taaaagaaat tataaagctt aaagcaatta aaaagttatg aggagtctga ctgtagctaa 000960 000961 tactttaaag ATATAAACTG ACTTGTCTAA CCCaaataat aataattatt attattttct tggagacaga atttcactct 001040 001041 tgttacccag gctggagttt agtggtgctg tctcggctca ctgcaacctc tgcctcccgg gttcaagcaa ttctcttgcc 001120 001121 tcagcctccc aagtagctgg gattataggt gctcgctacc aagcctggcc aattttttgt atttttagta gagatggggt 001200 001201 ttcaccatgt tggccaggct ggtctcgaac tcctgacctc aggtgatcca cccacctcgg cctcccagag tgctgggatt 001280 001281 acaggcatga gtcactgcgc ccagccCCAA ATAATTACTT TTAAACTATA GTATCTAAAT TTACTTTAAT GTTGACTTCA 001360 001361 ACTGATGCAA ATTAATTTGA TAATTTTCTC ACTGTTTCCC GTTATCATTA CATAGATGCT GGCTAAAATA ATATACTTCC 001440 001441 TCTCAAACTT TTAACGTAAT TCCAGGTTCA AAATGCCTGA TTAAACTGCT ACAAGAATAT TCTGGTACCT CTAGAACTCC 001520 001521 ACAGAGATAA GTTCACTCAA CTCTTGGAAC CTTGTATTCT CAGGGTGCAA TATGAGAAAC AAATCCCACA GATTGCATTG 001600 001601 ATTGGTTATT TGTTTTGGCC ACTCTGTAAA ACACATCTTC CTGTTTATGC CACTTATCTT GCCTGTAACA TAAGAACTTT 001680 001681 AGTTCTGCAT ATGTGGTCAG TGGTTTGCAC TTTTTCCTCC CAAGATCTAC ATGCAAAAGT TGCTGTTGCT GCTGCTGCTA 001760 001761 CAAAAACAGA AAAAAAAAAA TCAGGATGAA GACATGAAAG GACTTTGGGA ATGGTTGCCC TAAAAAAGGA AAGAGAGATA 001840 001841 AAATCATCAT GCTATGTTTC TTTGCTTTAT TAAAATGATC AAAAAAGAAA AAAACTATTT AA |
Predicted Small Protein
Name | NONHSAT096930_smProtein_299:541 |
Length | 81 |
Molecular weight | 9327.4738 |
Aromaticity | 0.05 |
Instability index | 79.27375 |
Isoelectric point | 10.4164428711 |
Runs | 9 |
Runs residual | 0.0263157894737 |
Runs probability | 0.0390488527743 |
Amino acid sequence | MRTLPTARSLHSPLHLPRGVRSQGPSPSQRHPGISPEEDSREEAHLRKAEREEKPKHTEA KKSLSFRKKQQKDFCFIFRN |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLHH HHLHHHHHHHLLLEEEEEEL |
PRMN | - |
PiMo | - |