NONHSAT097185
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097185 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2308 nt |
Genomic location |
chr4-:83814605..83822069 |
Exon number |
6 |
Exons |
83814605..83816000,83816845..83816927,83819142..83819215,83820866..83820890,83821230..83821376,83821487..83822069 |
Genome context |
|
Sequence |
000001 AGTTCGAAGG CTTCGAGGCT GCTCCCATAC GCACTGGTGG AAGGAGAGGC CGCGCTCCCG GCTGAGCACG GTGTCACGGG 000080
000081 TGCTGCAGCC CACTGCGGAG CAACTTCGGG TCATCTTCTT GTTACGTGGG GCCCCACCTT CGGGGTTCCC GCGACAGCAT 000160 000161 GAATCACGAC CACTTTAGCT CCGCCCGTTG ACTCTGCGGC TACGACCTTT ATTTGTCACG AAAGGCGGGC TTTAGAGGCG 000240 000241 CGGGACTTCC ACACTTCCTC TCCGAAGGCC CTGCGCCGGT GCCGTAGCCA ATGACAGGCC ACGTTGTGTC CCAGCAGCCA 000320 000321 ATCGGAAGGG CCTGAGCCTG AAGACGTGCA TTTGACCGCT CCTCCCTCCG CGTTGGAGGC GGAATAGTGG GTTTTGCTGC 000400 000401 AACCGGTTTA TTTTCCTTCT GTTTTCACCC ATTCTGGCAC AATCTGGCGC CATCGTCCTT CTTGTGAGGC CAAGCCTGAA 000480 000481 AATGCGAAGC AGAGAGGCAG GACCAAAATT GAGGCGAATC CAGGAACCTG CCAATGGGTC TCCGGGTGCG GTCTCTGAAA 000560 000561 CTGGAGGATA TCGGGAGGAA AGGCTCTCCG ATGCGGAGAT AATGGGGAAG CTCTTGGCAT GGTTGGCTGT AGGTATGTGA 000640 000641 TACCGGAGGA GCAGGAGTCA AATAGGATAC GCCGACTTTT AATTCAAGGA ACCCTTTTCT GAAACACTTT GCCACAATGA 000720 000721 AGGAAATAAG ATTACAGCCG AAGATACATA TTAAGGAATT GTACTCTCAG AGATGTTGAG AAAAGATACA TGGGTCTTGG 000800 000801 AAGATAATTA CTCAAAATAT GCAGGGAAGG AATAAAATTG AAGGGTGTTT TTCTTAGAGA ACATCATTTG TCATATTTAT 000880 000881 TTGATCAAGA AGTTGAAGAT TTATATAATA AGGATCTAGT TTGAAGCACT AAGAAGAATA AGACATCAGT TTGAAAAGAG 000960 000961 GCTCTATCAG AACAACACGA ATTCTGCTAA AATTGAAGCA AGAACAAACA TCAAATATAT GTTGACACTT GGGTGGAAGA 001040 001041 ATGGTGAACT AATTGATGCT TTATGAAAAG TTGATAGGGA CAGTGCTCCA AAGAAATCAG TTTACAAATG GATAACTCGT 001120 001121 TTTAAGAAGG CATAAGGTAA TGTTGAAGAA GAAGCCCACA GTGGCAGATC ATCCACATCA GTTTGTGAGA AAAAAGTTAG 001200 001201 TTCATGGCGT AATTGAAGAA AACCAACAAT TAACAGCAGA AACAACAGCC AACACCATAG ACATCTCAGT TGGTTCACCT 001280 001281 TACACAATTT TGACTGGAAA AGTTCAGCAA ACTTTATACC TGATAGGTAC CAAAACCATT GCACCCAGAT CAGCTACAGA 001360 001361 CAAGAATAGA GCTTTCAATG GAAATTTTAA ATAAGTGGGA TCAGGATCTT GAAGCCTTTC ATTGAAAAAT TGTAACAGGA 001440 001441 GATGAAACAT GGCTTTACCA GCGCAATCCT GAAGACAAAA CACAAAGCAG TGGTTACCAA GATAAGTAGT TCAGTTAAAG 001520 001521 CACAAGAGGA CTGGTTGAGA GCAAAGGTCA TGGCAACAGC TTTTGAATGC TCAAGGCATT TTGCTTGTTG ACTTTCTGTA 001600 001601 GGGCCAAAGA ATGGTAACGT GCTTATCATG GGAGTGTTTT GAGAAACTTA GCCAAAGCTT CAGCAGAAAA ATCCCCGAGA 001680 001681 AAGACCAGAG AGTTCTTCAC CACAACAATG TTCCTGCTCA TCCCTCTCAT CAAACAAGGC CATTTTGCAA GAGTTTTGAT 001760 001761 GGGAAATCAC TAGGCATCCA CCCTACAGTC CTGGTTTGGC ACCTTCTGAC TTTTTGTTTC CTAATCTTAA AAAAATTTTT 001840 001841 CAGGGCAGTA CATTTTTCTC AAGTTAATGT ATAAAGAAAC TGCATTGATG TAGATAAATT CCCAGAACTC TCAGTTCTTT 001920 001921 AGGGATGGAC TAAATAGCTG GTATCATCAC TTACAAAAGT GTCTTGAATG CTATAGAGCT AATGTTCAAA AATATAGTTT 002000 002001 ATATTTTTTA TCTTTTAACC ATTTTTCCAC AAACTTTTTG AAGTCTCCTT GAATATGTAC CATTTATAAA GGGGAAAAAT 002080 002081 TCTGTGACTA CTCATGTTGA CTTAATGCTG ACTTAATTTT CTGTTTTGTA AATATATACA AACAAGTTGA TACAAATTTT 002160 002161 GTTTATAGCC CTTAAACAAA TTTGTGAAAT AAATGCATTC AGAAACAAAC TAAAACAATG AAATGGATGC TACTGTTTTA 002240 002241 CTGAGGTGTA AGCATAGTAC TGGCTGCTAT GGAAAAAGTT ACATAAACAT TCATGTATCT TGTGATGA |
Predicted Small Protein
Name | NONHSAT097185_smProtein_1610:1873 |
Length | 88 |
Molecular weight | 10206.8399 |
Aromaticity | 0.126436781609 |
Instability index | 43.9379310345 |
Isoelectric point | 9.55780029297 |
Runs | 12 |
Runs residual | 0.000328407224959 |
Runs probability | 0.0122328210563 |
Amino acid sequence | MVTCLSWECFEKLSQSFSRKIPEKDQRVLHHNNVPAHPSHQTRPFCKSFDGKSLGIHPTV LVWHLLTFCFLILKKFFRAVHFSQVNV |
Secondary structure | LEEELLHHHHHHHHLHHHLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHHHHHHHEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT TTTTTTTTTTTTTTTTToooooooooo |