NONHSAT097186

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT097186

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2209 nt

Genomic location

chr4-:83814605..83822069

Exon number

4

Exons

83814605..83816000,83816845..83816927,83821230..83821376,83821487..83822069

Genome context

Sequence
000001 AGTTCGAAGG CTTCGAGGCT GCTCCCATAC GCACTGGTGG AAGGAGAGGC CGCGCTCCCG GCTGAGCACG GTGTCACGGG 000080
000081 TGCTGCAGCC CACTGCGGAG CAACTTCGGG TCATCTTCTT GTTACGTGGG GCCCCACCTT CGGGGTTCCC GCGACAGCAT 000160
000161 GAATCACGAC CACTTTAGCT CCGCCCGTTG ACTCTGCGGC TACGACCTTT ATTTGTCACG AAAGGCGGGC TTTAGAGGCG 000240
000241 CGGGACTTCC ACACTTCCTC TCCGAAGGCC CTGCGCCGGT GCCGTAGCCA ATGACAGGCC ACGTTGTGTC CCAGCAGCCA 000320
000321 ATCGGAAGGG CCTGAGCCTG AAGACGTGCA TTTGACCGCT CCTCCCTCCG CGTTGGAGGC GGAATAGTGG GTTTTGCTGC 000400
000401 AACCGGTTTA TTTTCCTTCT GTTTTCACCC ATTCTGGCAC AATCTGGCGC CATCGTCCTT CTTGTGAGGC CAAGCCTGAA 000480
000481 AATGCGAAGC AGAGAGGCAG GACCAAAATT GAGGCGAATC CAGGAACCTG CCAATGGGTC TCCGGGTGCG GTCTCTGAAA 000560
000561 CTGGAGGATA TCGGGAGGAA AGGCTCTCCG ATGCGGAGAT AATGGGGAAG CTCTTGGCAT GGTTGGCTGT AGGTATGTGA 000640
000641 TACCGGAGGA GCAGGAGTCA AATAGGATAC GCCGACTTTT AATTCAAGGA ACCCTTTTCT GAAACACTTT GCCACAATGA 000720
000721 AGGAAATAAG GAATAAAATT GAAGGGTGTT TTTCTTAGAG AACATCATTT GTCATATTTA TTTGATCAAG AAGTTGAAGA 000800
000801 TTTATATAAT AAGgatctag tttgaagcac taagaagaat aagacatcag tttgaaaaga ggctctatca gaacaacacg 000880
000881 aattctgcta aaattgaagc aagaacaaac atcaaatata tgttgacact tgggtggaag aatggtgaac taattgatgc 000960
000961 tttatgaaaa gttgataggg acagtgctcc aaagaaatca gtttacaaat ggataactcg ttttaagaag gcataaggta 001040
001041 atgttgaaga agaagcccac agtggcagat catccacatc agtttgtgag aaaaaagtta gttcatggcg taattgaaga 001120
001121 aaaccaacaa ttaacagcag aaacaacagc caacaccata gacatctcag ttggttcacc ttacacaatt ttgactggaa 001200
001201 aagttcagca aactttatac ctgataggta ccaaaaccat tgcacccaga tcagctacag acaagaatag agctttcaat 001280
001281 ggaaatttta aataagtggg atcaggatct tgaagccttt cattgaaaaa ttgtaacagg agatgaaaca tggctttacc 001360
001361 agcgcaatcc tgaagacaaa acacaaagca gtggttacca agataagtag ttcagttaaa gcacaagagg actggttgag 001440
001441 agcaaaggtc atggcaacag cttttgaatg ctcaaggcat tttgcttgtt gactttctgt agggccaaag aatggtaacg 001520
001521 tgcttatcat gggagtgttt tgagaaactt agccaaagct tcagcagaaa aatccccgag aaagaccaga gagttcttca 001600
001601 ccacaacaat gttcctgctc atccctctca tcaaacaagg ccattttgca agagttttga tgggaaatca ctaggcatcc 001680
001681 accctacagt cctggtttgg caccttctga ctttttgttt cctaatctta aaaaaatttt tcagggcagt acatttttct 001760
001761 caagttaatg tataaagaaa ctgcattgat gtagataaat tcccagaact ctcagttctt tagggatgga ctaaatagct 001840
001841 ggtatcatca cttacaaaag tgtcttgaat gctatagagc taatgttcaa aaatatagtt tatatttttt atcttttaac 001920
001921 catttttcca caaacttttt gaagtctcct tgAATATGTA CCATTTATAA AGGGGAAAAA TTCTGTGACT ACTCATGTTG 002000
002001 ACTTAATGCT GACTTAATTT TCTGTTTTGT AAATATATAC AAACAAGTTG ATACAAATTT TGTTTATAGC CCTTAAACAA 002080
002081 ATTTGTGAAA TAAATGCATT CAGAAACAAA CTAAAACAAT GAAATGGATG CTACTGTTTT ACTGAGGTGT AAGCATAGTA 002160
002161 CTGGCTGCTA TGGAAAAAGT TACATAAACA TTCATGTATC TTGTGATGA
[back to top]

Predicted Small Protein

Name NONHSAT097186_smProtein_1511:1774
Length 88
Molecular weight 10206.8399
Aromaticity 0.126436781609
Instability index 43.9379310345
Isoelectric point 9.55780029297
Runs 12
Runs residual 0.000328407224959
Runs probability 0.0122328210563
Amino acid sequence MVTCLSWECFEKLSQSFSRKIPEKDQRVLHHNNVPAHPSHQTRPFCKSFDGKSLGIHPTV
LVWHLLTFCFLILKKFFRAVHFSQVNV
Secondary structure LEEELLHHHHHHHHLHHHLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLHH
HHHHHHHHHHHHHHHHHHHHHHEEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT
TTTTTTTTTTTTTTTTToooooooooo