NONHSAT097259
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097259 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2952 nt |
Genomic location |
chr4+:85921840..85929901 |
Exon number |
3 |
Exons |
85921840..85921918,85925383..85925480,85927127..85929901 |
Genome context |
|
Sequence |
000001 AAAGGTTTAT GGGACTCCCc agtactctcc atgtagagtc taatgtagaa tccaggagtg cacagaaaag tcactggatg 000080
000081 acacagcaag aggcaacatt ttggaagcag agggcaactc tcactggaaa ccaaatctcc tggcaccttg atcttggatt 000160 000161 ttacagcctc cagaactttc tttctgtctg ctctatctct ctgtgtccag gatagctggg aggcattaca tagtcatgtg 000240 000241 cgaggtcaaa actgagtcac caccacaacc aagttccagc tggcaagaag aggaaaaata acacagagga gttatgacca 000320 000321 gtgttgtaag gatctggcct agaaatggca tgcatctctt ccactaatat cctattggta aaaatgtagt cacatgggca 000400 000401 caccacctat ctgcatggaa ggctgggaaa tgttgatcgg tagggcagcc atatgtgtag gaaggagaaa acagaatttg 000480 000481 gtggatacct agtagtctct gccataccct tgaccagaaa tttttcttct aaagaattta attctaaaag ttatagacat 000560 000561 tcccaaagat atacctgcaa gcatcacagc tttgtgtata attgcaaaag ttgaaatcaa catgaatgcc caaaatagtg 000640 000641 aattatttaa acagattatt acccatatta tgaagaaata ctctgcaact cttaaaaata aATGTAATGT gccaggcgca 000720 000721 atgggatatg cctgcaggcc cagctacacg ggaggccaag gcaggaggat cacttgaaat caagagttca agtctagcct 000800 000801 agacaacata gtgagacttg gtctctaaaa aagaaaaaaa aaAATAAAAC TGATGTAATG AATATATAAT TACAACAAAA 000880 000881 GAGGTCTAAC ACTATAGTAG AAAAGTTTGG GGCACTCATC CCATTCATAA TTATTTTACA TTTAAATTAC TGTTCCTACT 000960 000961 TAAGTGGTGA GCTTGGTAAC CATTTTCATA TCAGGTGATA CTGCTGCAGT AATCATAGCT GTTTGAATCA GGAATAATCC 001040 001041 CAATCACATT TTCTCTTAAT CGTTTATTAT ACTGGGCATT GGGGTTGCAA GATAATGCAC AGTCCGAGCT CAATACATGT 001120 001121 CTTCATGTAC CTGTATGTAA ATCCCACTTT TATTCTAAAA TTCTTTGAAT ATTTTGTTTC TTGGAACCCA ATGATCCTAA 001200 001201 GAAAATTATG TACTTTTACC TGAAAATTAA AACCAATATT TATAaaaagt gtatatgcag tatgatacca cttttaaaaa 001280 001281 aagataaatt tatagaaaaa agtttatatg actgacaaca atgtctctga gtggtaggat tacagttaat ttttattttc 001360 001361 ttcattctac ttatctttat tttctgaact ttctacaatg aacatgtttt atttttaCTT TTGTTAAAAT AAATAACATT 001440 001441 TAATTTGACG GAAAATTCTA AAAATCAACA TTTGGTAACT TAAATATTCA TTGGCACATG ATTCTGTGCC TGTTTCTGGG 001520 001521 GGTCATTCCC ATGAGAAGAG CAGGTAGAAC TTATGAGAAT AGAGCAGTCG AAATATTATA GGTTTCATAT TTTACGGCTT 001600 001601 TATTGAAAAC ATTGATATAT TGAATATTCA TAAATTTTAA TTTAACTTTC TTTTATAATC CTTAATGTGA GGCTAAGGTA 001680 001681 TAAGGAGAAA GGAGATTGGT AAGGAAGTGT GATACATATT GAATCAGGTG TCAAGGTACC ATTTGTGCCT GGATCTGACC 001760 001761 AATAGACCAA GGTAAAAATC TCAAAGAATG AGACTTGTAA TGAGAATGCC ACAAACTTGA ATACCTTATG CACAAAACAC 001840 001841 AAACATTGTT ATGCATAATG TACATGAACC CTGAAACAAA GATAATGATT TGGACCACCC AACTGAAGTG GCATGTTATG 001920 001921 TTTTTGGCAT GAACAAAAGA AACAAGAGAG aaaaaaatca aaataattaa aataaattGT TAGAGAAAAG TTACTTTAAA 002000 002001 AATAGCTATA ACGCTTTGCA ATTTCAGTAA CAGTTCTGCC TCTGATGCAA TGTAAAACAT GTATTAGACA TTCAGGCTCC 002080 002081 ACAATAAATT TTAATGAGCA CTACAAATTT AGAATATATA AAAATATCAG TAACCTATGA ATTCATCAAC ATAACTCACT 002160 002161 TTTCAGTTAA GTTAGGCTGA GTTGAAATTC TACTAAGTTT TCCCATATTC TTGATAAAGG CTAAATTTGA AATAATTTAT 002240 002241 TTAGATGACT AATTGGCAAT TTGATAGTAG TTACATTTTA TGTAACACTT GATATAATAA CCCAAATTAA TTAGCTCAAT 002320 002321 ATTATCTTCT GTGGTTTATT GATCCAAAAG TACATATTTG TTATGTAAAC TTATACTATG TAAACTTGAA TTAGTTTTTT 002400 002401 GCTTCCTTGA ATTAATAAAG CCCATTAATG CAAATCTAAG CCTTCATAGA CTTTTCCAAT CCTTAGTTAA ATATTAAAAA 002480 002481 CTGAGTATTG TAGTTATTTG CTAGGTATAA AAGGTGACTC AGAGTAGAGA GTAAGATGTC AGCAAATAGA CAATAAGATG 002560 002561 TCAGCAAAAG TGCCTCAAAT TTTAACTGCG TCAAGTTAAG GGCATTGTAA ATACTGTAGT TTTATGTAGC TTGCAACTTC 002640 002641 TACTGAAATG AGTTTAATCA TGTCTTTCAC ATAGCTGAAG TTTGTGTCAA GATTTAAGCT GATTTTCTCA TTCTTATCAA 002720 002721 AGTCTCACCT GGGGGTAGGG AGGGGTAGGC CTACCTCCCA CCTCTATACT ATCATTTTAG GAACAGACAG GCATAAATCT 002800 002801 GTTCATATGG TAGAACACAT GATGTTAGAG TATATTTTGT TGAATGCTAT GGaatattaa tataattaat tctaaaatat 002880 002881 CACCTAAAAT ATGTCAACTG AAGATCTGAC TGTACTAAAT ATGAAAAATA AAGCAGCACA TACTTTCTCT AC |
Predicted Small Protein
Name | NONHSAT097259_smProtein_8:214 |
Length | 69 |
Molecular weight | 7684.5945 |
Aromaticity | 0.102941176471 |
Instability index | 53.0457352941 |
Isoelectric point | 6.80621337891 |
Runs | 10 |
Runs residual | 0.00655802861685 |
Runs probability | 0.0496643702527 |
Amino acid sequence | MGLPSTLHVESNVESRSAQKSHWMTQQEATFWKQRATLTGNQISWHLDLGFYSLQNFLSV CSISLCPG |
Secondary structure | LLLLLLEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLEEEELLLLLLHHHHHEEE EEEEELLL |
PRMN | - |
PiMo | - |