NONHSAT097383
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097383 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2610 nt |
Genomic location |
chr4+:90041199..90044000 |
Exon number |
2 |
Exons |
90041199..90042022,90042215..90044000 |
Genome context |
|
Sequence |
000001 agacttgata atttactaga atgactcata gaacccagga aaatgctaca cttactagta gtttattcta aaggatacaa 000080
000081 atgaacaagc gatacatagg gggaggtcta gaagggtcct gagtgcaggc tttatccctt tggagttggg atgtaccatc 000160 000161 cttctagcac gtggatgtgt tcaccgactt agaagctccc taaaccccag aggcattatc gatggccaag cttttctttt 000240 000241 gtcccatatc gatgccaggg gtggtgtggc tggctgccct gggtccatca cgttcctcag tgggacccct atggccaagg 000320 000321 gatttagagt cagaagactt acagccaatt caatgtttta ggccaaatgg gaatggaggt gggcaggcgc tcagaaaact 000400 000401 cctttaatta agcaacataa gagaccaaaa ccaaaagcca aaaaaccagg ttaCAAAATT GACTTGTTTA TATCGATAGT 000480 000481 GCCTCTGGCA TATGTTGACC ATAAAAGGAA tatgaactaa aaaaataaaa tcctaagcct cccgacagac tgaatggacc 000560 000561 cgctcttggc caaacgggat ccccaaaacc ctgaaaatct atcagggtat ggcaggaagt gggcattgga cacacctcat 000640 000641 tgtgcccacc ccccgccctt tggaatttag gcacaagtga ccaccactaa cattaaaata gagattataa gaccgacaaa 000720 000721 accgactctt gtaacaacaa aataccaaat tataaacagg acctaagacc atgcaggcag gggttaagtg atacatgcct 000800 000801 acacttaaag agtaagctgg ccggggcatg aacccaggaa gcggagcttg cagtgacccg agatcgcgcc actgcactcc 000880 000881 agcctgggtg acagagcaag gctccgtctc aaaaaaaaaa aaaaaaaaaa aatagtaagc tgtgttctag ctgctacaag 000960 000961 ggttttcttt ttccctaaca gttagacaag cactggcctc aaACTCACTG GCCCCCAGcc cctgttccat cagccataac 001040 001041 tacagattta attaacacga gactgacttt aataattttc acctgataga agaccacgga ctatgggcta gttctagctg 001120 001121 gtttacagaa attgcacact tgcgtgcctt tctgccctga aaagaccttt taatgtatag gacctaattg taatacgttt 001200 001201 aaatattaag tctccaccac aaaataacat gggtcatatg ttacatgcat atttgttgaa tgcacatggg tcaggaccac 001280 001281 cttcatgaat attcctagcc cctcctgcaa cctgttaaat atgtaagttc agccaacatg ttGTCATATT CCCACAGGAC 001360 001361 CTCCAAGCAC GATTGATAGG GGAGAATGTG CACTATAATT AAGACTGAGT GGTATGTGTA CATCCTAGAT AATTCTGGAA 001440 001441 ACAAATCCTC AGCCCTATGA GACATGCATA AGCAAATTAA TGCTATGTCT TATCCCACAA TGTCCTAAGT CAGTGGCTCT 001520 001521 CCTCATGGTT TGGATCAGGC CCCTCTTGGT GAAAAAAAGT TGCTCATAAT TTTAGCCATG ATTATAGGGC TAGGTTTATT 001600 001601 CTGCTGCTGT AGACTCTATT GCAGTTACAC ACTCACCATG ATGCTCTAGC AGATCTCTTC CTTAAGCCCA TGGACTCACA 001680 001681 AATATTTTCC ACTCCAAGTG GTGAGGTTCC ATTCCACTGC ACCTTAACTG CACCCCGTTT CAGCAGGAAG TACCTAGATG 001760 001761 GAGCACATCA CCCCCTTTCC ATAGAAATGA AATGGAACTT GACAGTGGGG AGTtgtaacc aagagtgtca gctttaaaat 001840 001841 gtattttaaa gccttcccac tagccttaaa gtgtatttaa aaggtttttt tccttttttt ttctctcctt ccccctggac 001920 001921 actgccttat accatgacct tatgaccaac ttatacatgc ttatctaact gtatgcttgc ttagaaattc caggggctgg 002000 002001 ccgggcgcgg tgactcacgc ctataatcct agcactttgg gaggccgagg tgggcagatc actggagatc aagaccatcc 002080 002081 tggctaacac cgtgaaaccc tgtctctact aaaaatacaa aaaaaaaaaa aaattagctg ggcgtggtgg cgggcgcctg 002160 002161 tagtcccagc tgctctggag gctgaggcag gagaatggca tgaacccggg aggtagatct tgcagtgagc cgagctgaga 002240 002241 tcgcaccact gcactccagc ctgggggaca gggcaaaaaa aaaaaaaaaa agaaaagaaa ttccaggggc taatcttgaa 002320 002321 acagcccagg cctggagacc cagctgcaga ttacctcaag gtggttaatc tacaacctgg tcacagtcga catgggacca 002400 002401 gctagtactc caggtggaca gtaactcaag atagccatcg gaacaagaca tgcagacctg tactctatac gattcctgcg 002480 002481 tgtttcccac accaggtttc ccttttataa accccttcag tcagccttaa aatttgagtt atcattttga gactcgagtc 002560 002561 cggacatgtc ctcaactgct agcattttat taaaactgct ttcctttcac |
Predicted Small Protein
Name | NONHSAT097383_smProtein_221:406 |
Length | 62 |
Molecular weight | 6623.7075 |
Aromaticity | 0.0819672131148 |
Instability index | 60.1672131148 |
Isoelectric point | 8.88433837891 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0195699901582 |
Amino acid sequence | MAKLFFCPISMPGVVWLAALGPSRSSVGPLWPRDLESEDLQPIQCFRPNGNGGGQALRKL L |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLHHHHHHHH L |
PRMN | - |
PiMo | - |