NONHSAT097518
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097518 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4844 nt |
Genomic location |
chr4+:100010008..100222513 |
Exon number |
10 |
Exons |
100010008..100010435,100054706..100054956,100075702..100078736,100125514..100125588,100207952..100208190,100209823..100209942,100212094..100212105,100221456..100221527,100221626..100221812,100222108..100222513 |
Genome context |
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Sequence |
000001 GGCTGCTAAG TTGTGCGTTC CAGGGTGCAC TCGCCGGCGA GGCTGCACGG CGCCGGTTTC ATTGCTAAAA TCCGACGGAC 000080
000081 TTGTTGCAGA ACTCGTTTTT TTTGTCGGGA AAGGGCTTCC CCGTGTAACT TTACAGCAGT TATCGTAGAT AAGACTTGCA 000160 000161 AATTACAGAT GTGGACGGTG AGGGAACGGG AATTTCACTG AAAGCGCCTG AGAACCAGTA AGAGACCTGC AACAGCTTTG 000240 000241 TGCTCCACTG GCGAATGCTT CCTCCCCTAA TACACATTAT GTGTGCTTGG AGACACAAGG AGTAAGATAC AGCCCCTCAA 000320 000321 GGGACTCGTC ATAGGGAGAG GACACAGCTT TGGGAATAAA GGGGCCACAA AGGAGGAGAG AGGAGTTTGC TGAAACTTCC 000400 000401 CAAGCTCCCA TTCCAGCAGT TCCTGAAGGA TTCATTTCTC TCTGAGGATC TCATGAGGTG GCTTAGCAGC TAGAATCTCT 000480 000481 TCCTTAACAG TGGGAAGAAC AACTCCTGGA AATTTAGGTC GGCTTTGACT GGATTTAAAA GAAAGCTGTA TAATTCCACT 000560 000561 TCTGTATATA CAACCAAAGG AAATGAGATG TGCATACCCA TGTTCAATGA AGCATTATTC ACAATAGCCA AAATGTGGAA 000640 000641 CCAATCCTTA AACAAAAGGA AAACAGAAAA TCTGCTCAAG TCCCTGCAGG CACCTGAGAA AATCACAACC CACACTTGCG 000720 000721 AACCCCTAGG AGACCTAAAG CTGTGGTTTT ACAAATAAAC AGATAAGTAA CATTCCTACT CTTTCCTATA GGTACTCAAT 000800 000801 CTTCTTAACA ACTCCCATCC CACACAGGTT TGCATCCCCA GCAGATACAT ATGGCTATGT GGTCACCCAT TCGATCAGCC 000880 000881 TATAAAAGAC TTGTCTTATT TGATATTGTG AAACCCATGG TTATCAGTGT ATATGAAAAT GTTTGGTTCA GGGGTCAATG 000960 000961 TACAATATGA CAAGCAAAGT CCTCTAATAC ACAGTTATAT AAAATCACTC ACCTGAGAGC TAAGTGGACA ATTGGCCTTA 001040 001041 TATTGGCTGG AGTTGGAGCC CCAGAGGGAA AATTTGCCTA TTATTAGGCA ACTCTTCAAA ACTTTACTTA TTCGTTTCTA 001120 001121 AACACTGTCT CATAAAATGG GGGATGCTTT AGATGAATTA AGATTAGCAC TAGATTACTT ATTCGTTGAA AATTAGCACT 001200 001201 AGATTTCTTA TTGGTTGAAC AAGGAGGAGT GTGCACCATA ATCAATATAA CCTGCTGCAG TTATGTAAAC ACCTCAGGTC 001280 001281 ACATAGAAGA AGATATACAG AAAATACATG AACAAGCTGT GTGGTTGCGT AAATATAACC AAGGCACCAA TCCCAACTGT 001360 001361 ATCTGGTCAG CCATTAGAAG CACCCTCCTG AGTCTCACTT GGTTGTTGCC CTTCCTAGGA ACTTTGATAG TTGTCTTATT 001440 001441 ATTAATCTTT GGCCCTTGCT TGTTTAAATT CTTGGTAAAG TTTGTGTTTT TTAGATTACA ACAATTCCAC ATAAAGATGA 001520 001521 TACTGACACA AAGCTTCCAA TCCATCCCGT CTTCTGAACC GGGAAATAAA GACACCCTGC CTTTAGGTGT CTTTAGATCT 001600 001601 AGATCAGGCA TCTAGAGATT TTTACTCCTC CAATACTTGG CAGGGTCTAT GCCCGTAGAC TCATCAGGAT ACCATGTAAA 001680 001681 TGAGGACCTC CCTTGGTACC CCAGAGGCCA ATTGTAGACC CTTATGAGAA AATCCTGTCC CCAAAATGAA CATCCACTGT 001760 001761 CAGCAGGAAG AAGTTACAGA AGACCAGCCT TTGCCCTTAC GATTAAGGGT CCTCTTGTAA GTAGAGAGGG GAATGTTAGG 001840 001841 AAAGCAGGAG CCTAGGTGAT CCAGAATGAC ACCATTTTAA AATAAACTCC ACCTGAAAAC TAGCAAGGCA TCTGCACACA 001920 001921 TCTGTTTAGC AAGTATATCC TTCTGTAACT GGAATAAAAA GCGTTATTTT AGAATATGCC TATAGTTTGT AATAATTAGC 002000 002001 CGAGGGAAAA AAAGTTCACA TTGGTGTAGG AAAAGTGCCC TAATGGTCAT GGGTAATAAT GGGACCGTGG TTCTGGTCAG 002080 002081 TGATTTGATG GAAGGGGTGT AGATAATATA TTGTTGTAAA TAATAAAAAT AAAAAATTGT TGTAAGTAAT AAATAAAATA 002160 002161 ATATTGTTGT AAGTAATAAA GTAGGAGAAA TATTTGGTCT TTTGCTTTTG GGTTAGTGCA ACAGTAGTAC CATTACTTGG 002240 002241 AGGAGAAGTT AGAGAAGGAC AAGAATAGGC TTGAATAAGA TGAGTGAGAA GAGAGAAAAA TTCCGTAAGT GGAGATGGCC 002320 002321 AGGGAACACC AGGGCAGCAG AATCTAACTC TGAATTTAAT GCTGTTGTCT GTTCATATTG CACTGCGCTG TAATCTCCCT 002400 002401 ATCTTTCCTA AACCATTGGC AAAGTCTGCT ATCCACAGGG GCCTTGGGTC GGTGGTGCTT TGGGAAATAC CAGAAGAGGG 002480 002481 AAAGTACGGC AAATGTGCAG TGTCACAGAT GATAGGAGGA AAGCTGGCCA GTGGGATGAT TAAAACAATT TCGGTGGGAG 002560 002561 TGGGAATTCA GACCATGTAA ATGGTCTGAA TTAAGAAAAT TTCAAGAAAC AAAAAATGTT TCTAATGAGC CAAAGTGAAA 002640 002641 GCTCTTCATG ATTTCTTTAT AGAGGCTCTC TAGTGCTTGT CCTAATTTCC TGAAATCTCA TGGGTATCTT ACTCTCCTGG 002720 002721 TGCCCGCCTC AAACATTCAC TGTAGCAATT ATATGAGCAG CCTGGAGAAT CCCAATCCCA GTGGCCTTGC TCCCTGGATC 002800 002801 TACTTTCTCT TAAAAATCAT TCCCCTAAGT TTCCGTCACT TGGTTGAAGT TTAGTAGATA TCTCCACATC TCCAGCTAGA 002880 002881 ACAGCACCGG AATTTCAGGA CTAGGGCAAT AGAGTCTGAT ATTAAATTCT ATTTCTATCT ATCTATCTAT CTATCTATCA 002960 002961 TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCCA CAGAACAATT TGTGGGATAG TAGCTTTGGG GTCCCAGATC 003040 003041 TAGGATGGGC CTGGTCCTCC ATGCTGGTTC TCCTGGGTGA TATTTCTGTT AGTTTGAACA GTAATCACAC TTTTATTACT 003120 003121 GTTTCATCTT TTTTTTTTTC ACTCTTAGAC TGATTTTATC ATGTGTATAA AACATACACA CACCTACATC TCAAGGATAA 003200 003201 ACATTAATCC TTGAAAAATA TGTGGTCTAA AACTATATTG AGGAGAGAAA GATAGGACAC TTTAATTGCC ACATGATTAA 003280 003281 CACGAGGTCA CCACACAGCT TTCACAAATC TACAAGTCAT TCTATTTAGG CTGAGTCAAG TTCTCCCTTG GGCCAGCCAG 003360 003361 AGCACAAATA ATGGAGCAAT GTGACTCTTC AATGACAGAT CTCTGATTTC CAGAAAAGAG ACTTTGAAAT ACCCAATTCT 003440 003441 AGTAAATATG CAATTAAATT TCCAGCTAAA TGACCTTTGC TCCTGTAGTC TTCATCTTGG GGAAGGGAAA GAAGTCTTAT 003520 003521 TCTGTTTAAT AGTTTGATTT TTATAATAGG GTTTGTCTCT GTTATAAATC TTGTTTGATA TTTAAAATGT TAGCTAAGAG 003600 003601 AAAACTTCTG TTTGTTTTTA TTTAGTGGGA AGAAACTAAC CCTCATTGAG TGCCTAGTTA ACATCAGGCA CTTTGTACAC 003680 003681 ATAATCAATT GAATCTTGAC CACAACCCTG TGAGGTGAAA AATGAGAAGA TTAAATAAGC CATGGGAAGA TTTTTTAAAA 003760 003761 TGACATGAAA CTCCAAGGGT AAAAAGTAGG CTGGGAAATC TTAGGATGGT GAACCATCAT GTTTCCTGAA TGTGAATCCT 003840 003841 GTACCTGGTT TGACTGTAGT CACCCCTTCT CCAACACTCT CCACGATGCC GGCTGCCTCA TGGCCTAAAA TCACAGGAAG 003920 003921 TGGGGTCACC ATGGTACCAC TAACCACGTG GTCATCTGTG CCACAGATTC CTACAGCCAC CATCTACAGA GTGAAGAGAA 004000 004001 GATGTTTATA AAAGATTGTG AGTCTCAGGA TGTTCAACAT GATCAATGCC AAATAAATAT CAGAATACTT GGAAGTAAAG 004080 004081 TACTAATAGT AGGAGTTCCT GATTATCAGG TGCCTATGAT GTGACAGGCA CATTGTGGCC TGTGCTCGAC CAGGAGACTG 004160 004161 CTTTTCCAGG CTGAGATCAA AGACGGTGAT GTGCCTACCC GCAGATCCTA GATGGCCATG TTTGCAACAG AGGTAATGAT 004240 004241 GAGCAGTGCG AAGATGTGAC TCCAAAGCCT GGAGAAGGAC AGACCAGCAT CCCTGCAAGA GATCCAACTG TCTTCTTTTC 004320 004321 CGCAGAGGTC CATAATTTAC ATGGGCCTGA CAAAGAATAC TGTAACTTGC AGAAATTATC TTCAGTTCAA ATCCTTCATT 004400 004401 TTGGGGGTTA AATAACTTGC CCAAGATGTC GAGGGAGCGG AAATACTTGC TGGTCTTGCA GCGGCTGTGG AGCCTGGAAT 004480 004481 CCTGCCAAGA AGAGCATGTG TGAGAGATCA AAATGTTTGC TTACATTCCT CCTGTGAAGG GAGTTGGGAA ATAACCTAAG 004560 004561 AAGCCCAATC CAAAAACAAA GATGTACCAT CCAGTCTTCT CTGTGAGAAC CAAACTACAA ACCATCTGAA TGTTCCAAAA 004640 004641 GTGTTTTGAT GATGTATTGA TGTATTTTAA ATTATCCTGA AAATGTTCTT GGCAGATGCT TAAACATGTA ATTACTGAGA 004720 004721 TGATGTAGAA ATACCAAGTG TTTATTAAAA CAATACAGAG TAATACAAAT GGTATGTTTG TCGCAATATA AAAGTATCTA 004800 004801 AAAATTAAAG AGTTCTTTAA TGGTGAAAAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT097518_smProtein_587:757 |
Length | 57 |
Molecular weight | 6615.7851 |
Aromaticity | 0.107142857143 |
Instability index | 54.4180357143 |
Isoelectric point | 9.09942626953 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0158477805537 |
Amino acid sequence | MCIPMFNEALFTIAKMWNQSLNKRKTENLLKSLQAPEKITTHTCEPLGDLKLWFYK |
Secondary structure | LLLLHHHHHHHHHHHHHHHHHLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |