NONHSAT097673
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097673 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2459 nt |
Genomic location |
chr4-:106279607..106285763 |
Exon number |
3 |
Exons |
106279607..106280310,106281485..106282259,106284784..106285763 |
Genome context |
|
Sequence |
000001 ATGTGACACA CCTGCTCCCC TTTTGCCTTC TACCATGATG TAAGCTTCCT GAGGCCCTCA CCAGAAGCCG AGCAGATGTT 000080
000081 GGTACTGTGC TTATACAGCC TGCAGAACTG TGAGCCAAAA TAAACCTCTT TATAAATTAC CCAGCCTCAG GTATTTCTTT 000160 000161 ATAGCAACAC AAAAACAAAC TAATATACCA TCTGTCTACA TTAGTCCAGT TAATGATTAT CTTCATAGTG TGTGATGTTA 000240 000241 TGTAATTATA ATCTTAGTAT ATAATTTTGA AATTTTTAAA ATTATAGGCA TCTTTCTATG TTGCTACATA GTCATCACTA 000320 000321 TTATTATGAT GACAATGTGG CTCTTTCATG ATTGTTTCAG AATGTCTTCC ATACTAGCTA ATTTAATTTT TGCCAGTCCA 000400 000401 ATCCCATGAA ACAAATTGAA TAGACATTAT ACTAAATACT TACAAAGGAA AACTACTGGG AAAATTCAGA GTGAATTATT 000480 000481 GTTAAAACTG CCTAAAACAA ATTAGGAAAC TAAAATTGAT CCATAGATGC AATTTTAGGT AATACCCACA GCCAGTTCCC 000560 000561 ATGGATGTGA AAAAGTAAAG GGGGTGGACT ATCCAAGAAT CACTCTCAAA CTTGCTATAA GTACAAAATC TGAAATTTTT 000640 000641 ATGAGCTTTC ATTTATTTTT CACATAAGAC AAACATTTCA TATACGATAT ATTTAGTAGC ATTTCTTCAG TCTACAGAGG 000720 000721 AGCACTTAAA GTCTGTTCCT CCACCAATGA CTACATGCCT TTTTAGCAGC TTATATGCTT ATTAATAATA TGATGATTTA 000800 000801 GTTTCAGAAG GGGCATCATT GTCTTGCCAT AGGTCAAGGT ATGTCTTGCC ACTACTAGTT TATCTTTACT CATTATACTG 000880 000881 TCTTATAATG TCTTACATGG TGAATCAAAT CTTTAAATTC CTGTTGGCTT CTATTATTTT CATCCTTCTT TCCATATTCT 000960 000961 GTTTTACCAG TGGGCTGTAT CTAGTGAGTG GTAGAGGCAG AAGTAGAAAA GAGCTCTGGC TTTTGATTCA AGGATTAATG 001040 001041 TCCCTTTCAC TCTTATCGTG TTGCTTCTTG AACTGTTACT TATCCTCAAA GTCCAGCTCA AATGCAGCCT TTTCTGTCCC 001120 001121 CAGCCCTTCA CATTGAAATC AATTATTTTC TTTTCTGTGA GAGGTGAATA GCACTATATA TTTATTCCTC CATTATAGTC 001200 001201 TTTAGGTCAT TCTGACTTGT ATTAGAATTG TTCATATTAT CTCTTTTACT AGATTATAAA CTCACTGAGA ACACAGATTG 001280 001281 TTTTATGACA ATGTTGGCAT TATTGTTTTG CACATTAACA GTTCATGTTT ATTGAATTTA ATAGATACAA CATCCTGTGA 001360 001361 GGAAAACAAA TATTCTTTCC ACTTTACTTA CTGCATTAAG TAAAGTTTAG AGAGAAGTTA AGTGGATTCC TGGAAATCAC 001440 001441 AGGCCTTCTG CATCTTGTCA GCATTCTAAT ACTGCATTTG AAAGCACTTT GAGGGGTGTC TCTCTGCTCT GTTCCAAAAG 001520 001521 CCCATGTAAT ATCTTTGAAA TAAAAGAATA TATTTGTTTT AAGGATCTCC AAAAAAGGAG ACTTAACATA TCTAACTTAA 001600 001601 ATACCAGGTT TTTAAAATTT AGCTTACTTT TAACATATAT GTACCTGATC ATTGTATTCA GAGAGCTTCT CATAAATCTT 001680 001681 ACGGTATAAA AAGTAATACA TTTCTTTTCA AAATAGAAAT AAATTTTATA ATAAATTAAC TTTTTGCATA ATTCTCACTG 001760 001761 ATTGGTGTGT TTACAATCCT TTAGCTAGAC AGAAAAGTTC TCCAAGTCTC CACCAACCCA GAAGCCCAGT GGCTTCACCT 001840 001841 CTCACTTCCA TGTTTGAAAC TTGACCTCCT GAACTTGAAA GTAGCAGTAA CATATTTTGA TTTTCTGATG AGAAATACCA 001920 001921 TGATTTGACC ACAGTCATAG AAGACCTAAA TAATGTGAAG AGAGTGGTAG AACAAATAAG AATAATATAT AGTGAAAATG 002000 002001 AGAAAAACGT AATCCACCTG GATGTAATAT AAATTAGTTC AGTTGATACA CTCTCATGAA AAATAGTTTA AAGGTCACCT 002080 002081 GTTGCACTTA AAACCCCACT TACTCGAAAC TACTATGTTT TAGGGGATAT TTTTCTCAAA GAAAAGTTAA TTTTTTTCCT 002160 002161 TTTCCTTCTA TAACATCACA TGTCATTCCT TTGACTTCTC ATTTTCTTTA GTTTTTTAAG AAAATTTTTA AAACTCTTGA 002240 002241 TTTATTAAGA TTTTAGAACT CTTGGTAGGC TCTCAAACCA TAATTTCATT TTTACCAATA CCTACTCCAG CTTGTATCTT 002320 002321 GCCCCACAAA ACAAAGTACT ATTAATGTAA TTTACATTAA TGTCTGTTAA TTTGTCTCTA GAATATACTT AACCATTTAC 002400 002401 AGATAGATTT TATTTAATAC AGAAATCTGC AGAAAGTACA ACAGCTATAG ACTGTAGGT |
Predicted Small Protein
Name | NONHSAT097673_smProtein_887:1135 |
Length | 83 |
Molecular weight | 9138.8044 |
Aromaticity | 0.134146341463 |
Instability index | 59.6902439024 |
Isoelectric point | 9.38323974609 |
Runs | 11 |
Runs residual | 0.00175535846268 |
Runs probability | 0.0320373849786 |
Amino acid sequence | MSYMVNQIFKFLLASIIFILLSIFCFTSGLYLVSGRGRSRKELWLLIQGLMSLSLLSCCF LNCYLSSKSSSNAAFSVPSPSH |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEELLLLLHHHHHHHHHHHHHHHHHHHHH HLEEELLLLLLLLEEELLLLLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTT TTTTTooooooooooooooooo |