NONHSAT097756
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097756 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3711 nt |
Genomic location |
chr4-:109459346..109541613 |
Exon number |
4 |
Exons |
109459346..109461970,109463175..109463372,109477421..109478220,109541464..109541613 |
Genome context |
|
Sequence |
000001 TCACACTAGC TGTCTGTGTC AAGGCCACGC AGAAATCTAT TGGAAATCGC TGTGGAAACA AACGCAAATG AAAAGCCGCA 000080
000081 AAGAGCAAAG GCTGCTCACT GGCCCGTCTC CTCTCATGAC TGCTGCTCTG GGAACCACCT CTCTGCTCTC CATCGCTACC 000160 000161 ACTCTAGCCT GTGGCCTGCT CCTGGTTGAA GAAGCCATCA ATGAAAATGA ATACCACTCT GGAAATCTTG GGTGGTCTGA 000240 000241 CCTGATATTT TCGCATAGTG GCCACAGATA TTTTAGGCCC CCAAGAGGTA GTCTTACTCT TTCAATTTTA CTGGCTCCAC 000320 000321 TGTTTGAGGA ACTTGGAACA ATTTCCCCAG GGACTGGTCT GGAGGTACTG TTGAATAACA CCACGGTGTT TTTTCCTCTC 000400 000401 CACCAAGGGC CCGTTGATGT CTCAAGACCA GACATAAAAC TTTTGGTGCT CAAGTCACTC AGAATGAGAG TCCTGCTTTC 000480 000481 CCTCAGCACT CTTGCCCTTT GAGGGTGGGG CCAAATGTTT TCTTCCTTTC TTACTGAGGA CTTTTGATCC TGGTTTTTGA 000560 000561 TATTTGTCAT TCCCAGGGGG AATTTTGTAC CCTGTGTCTT GGTAAAGTGT AAGACCACTG TGGATTTTGG GGTTAAGTCT 000640 000641 CATTTCCCTA TCCCTCCCTT CAAGAGAAGA AAGAAAGAGA GAATACCCAA ACCCTGCATC GTCTCTCACT CGCCTGTCCA 000720 000721 GAGCCTATGG AACAGCCATT GGGGCAGCTG TCACAAGCTG TTCACACAGC TTTTCTGATA TACTGACAGT CTCATGAGGA 000800 000801 AGTGCATATA ACTCCCTGCA ATGGTTTGAA TGTGTCCTCC GAAGTTTATG TGCTGGAAAC TTAATACTCA ATACAACAGT 000880 000881 GTTGACAGAA ATAAAAATCT GTCCATGGGC CCTAAACATA TTGTGAGTCT CTAGTCGCTG TGCCCTTTGT GCCTGCTGGG 000960 000961 GATATTGGCC CTGGCAACAG GATGAACATG GACCACTGGA GCCTGGAATT CTGCCACTGA GAGATTCCCC GGGAGCATGG 001040 001041 CTTTCTTTTC TTTCCTGGGT TCCGTGGATT CTCTCCTTCT CCTGAGGAAT TAGCCTCCTT ACTGTCAGAC CAGCCACAGA 001120 001121 ACTTCCTCCC ACTTATCCCT TAGATGTCAA CTACCCACAC TTCAAATCAC CCTGGAGACT GATGTGACTG GGATGATTTG 001200 001201 ACTGCATGTA GGTCAGAGCT GCCTCCAGGC AACTTGTGGG GCCAAGGCTC TGTGGCTAGA AGGAAGTGAG CATTAATACA 001280 001281 TCACTTAGAA CAGCAAAAAT CATCATCTGA AGATCATCAT CTGAAAAGAT CAGCATCAGA AGAGCTGTGA ATATCACCGA 001360 001361 TCTGATAATT GGGTATTTTT GGTAAAACAC ACACACACAC ACACACACAC ACACACACAC ACACACACGC ACAGATGCAC 001440 001441 ACAGCCCTGC TTTTATGAGA ATTGAGCTTA AATAGATGTG GGTGGAGGTT TTACTGAACT GGATATTTCT TAACTTTTGG 001520 001521 AGTACAACAC CTAGTCTCCT AATTCCTGTC CTGCATAGCG TGCTTACACA GTATTTTAAA ATTAGAGATA ATTAAATTTG 001600 001601 ATTTTGTTTC AATAATTATT TTGACAGTTT TAAAATATCT TTTGGAATTG TTTGTACCAT TCCAGTCCTT TTCAAATCCA 001680 001681 AGACTGAAAT GAATTTTTCT AGCTATTTAT CCCATCTTTG AGTTAAGAAC ATAGGTCCTT GCGTTTCAGT TTAATAGGTG 001760 001761 ATTCTTTAAA ATTTGTTTAT TTATTTAGAA GCAGGGTCTC ACTATGTTGC TGGCTGGTCT TGAACTTCTG GGGTCAAGTG 001840 001841 ATCCTCTCAC CTCAGCCTCC CAAGTAGCTG GGATTACAGG TGTGAGCCAC TGCACCTGGC TCTAATAGTT GATTTTTGAA 001920 001921 ACCATATGGA ACATTTCAAG TTAATAAAAA TTTTTAATTA AAAAATATGT GCACAATTCA CAGATGATCA GTCTTTTGGA 002000 002001 ATTATTATAG AATATTTTTG ACAATAAAAC TATGCTGAAC TCAATCTTTT CTTAATGATT ATGAAGATAT TTTCTGATTG 002080 002081 CAAAACTATG AAAATTAATG GTCATTGTGA TATTGTTGTG AGTCTAGGTC AATGTGGAGT TCTGGAGACA GAATAATACC 002160 002161 TAAAGTAGAT CTGTTTTTTA CTTTGGGAAC TGATTATAAC ACCTGGAAAT TATGTGTTAT ATTATTTAAT TAAATGAGAC 002240 002241 AATGTATATA AATAAACCAA GCATTGGGGC TTGGCACATA GTATTTTTCA GTCAATGAGA GAAGAGTTTG AATATGAAAT 002320 002321 TTTTTATGCA CTGGGGAGTA ACTTCCTAGA TCTATTTCTC TATGTACTTC CTCTCTGTCA ATCTCACTCA TTCAACAATA 002400 002401 CTTACTAAGC ATATACTATT AATATTATAT TGCATTGATT CTAAATCAGA CACATAGTCA CATTTTATTA ACTCTAAAAC 002480 002481 TGTGATCAGT TTTAACATTG CTGGTGGCTT ACAAATACTG TCAGCTAGAA GCAATCATGA TGTACTAGTT GGCTATTCTT 002560 002561 TTTGGTGGCA CAATTGGATA ACTGAGCCCC TTCGTGTTTC TGTCAACTGA CGTTTATGTT TGAGGAAGGC ACATGAATCA 002640 002641 GGGCCATTGT TTGAAATCTA ACCTTTGGCA AAAATCGGTA AGGAACTAGC CCTCAAACTT GCCTAATGGT AGGTGTCAGC 002720 002721 GGCTTGGATG AAAATTCCCA GGGATAATAG AGGAGTACTC TTTTAAGAAA TAGTGTAGCA CCAACACTCT AGATGGTACA 002800 002801 GAAGATGGAT ACTGTGGGAA AGTCAGGGAC ACTGATCACT CTATTTGAAA GGTAATTCAG CAAATTTAGA CTCACACATA 002880 002881 TAAAGAAGTT TAGAAAATTG AACCAATTAC TTTTGTTTAT ATTTTTCTTT TTATGTATGT GTAAGAGATA AGATAAATAT 002960 002961 CTGTGACTAA ATATGTCTCT TATACCAAAT AGAAAAATAT ATCCAAGAAG AAATTATAAT GTCATTGTTT TATTAAGCAT 003040 003041 TATGTCATGC TTTTTGGAGG CATTTCCACC CTTTTTTATC TTTCTTAATG GTATATAAAA TTGCAGTGCA TTTCACCATC 003120 003121 AGTGGTTCAT TGGATTCGGT GAAGTCTAAG TAACTGCTGG ACCTTGCGTT AGGCTTTTTA GATACAATTA ATTAAGCAAA 003200 003201 TATTTATTTA TTTATTTATT TAAATTGAGA TGGATTCTTG CTCTGTCGCC TACGGTGAAG TGCAATGGCA CCATCTCGGC 003280 003281 TCACTGCAAC TTCCGCCTCC CAGGTTAAAG CGATTCTTCC ACCTCAGCTT CCCAGGTAGC TGGGATTACA GGCACTCGCC 003360 003361 ATCATGCCCA GCTAATTTTT GTATTTTTGT AGAGATGGGG TTCTACCATG TTGGCCAGTC TGGACTTGAA CTCTTGACCT 003440 003441 CAGGTGATCC ACCCGCCTTG GCCTCCCAAA GTACTGGGAT TACAGGCGTG AGCCACCACA CCCGGCAGCA AATATTTATT 003520 003521 GAATGCCTAC TGTGTGCCCC AAGCTGTTCT AGGTGCTATA AATGGGCCAG ACAAGCTGTC AGGGAGGTTG CCCTGGCTGG 003600 003601 GAAGACAGAC ATCAGACAAC ATAATTCCAG AGCTGGATAA ATACTAGGGA GAAAAACAAA TGTGTGATGT ATTATAATGG 003680 003681 ATATTGCAAT AAACACTGGG ATTTAAGACA C |
Predicted Small Protein
Name | NONHSAT097756_smProtein_2972:3097 |
Length | 42 |
Molecular weight | 4848.8369 |
Aromaticity | 0.170731707317 |
Instability index | 60.8048780488 |
Isoelectric point | 9.77899169922 |
Runs | 6 |
Runs residual | 0.0296274128385 |
Runs probability | 0.034740622976 |
Amino acid sequence | MSLIPNRKIYPRRNYNVIVLLSIMSCFLEAFPPFFIFLNGI |
Secondary structure | LLLLLLLLLLLLLLLEEEEHHHHHHHHHHHLLLLEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooo |