NONHSAT098070
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098070 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1658 nt |
Genomic location |
chr4+:120375983..120465272 |
Exon number |
12 |
Exons |
120375983..120376288,120381338..120381397,120381886..120381982,120382872..120383006,120384051..120384134,120414488..120414592,120415588..120415678,120418966..120419058,120433506..120433619,120433968..120434125,120449895..120449944,120464908..120465272 |
Genome context |
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Sequence |
000001 CGCGCTTGAG CGGACGCTGC CTACCGGTGG CCGGGCGGGA TGTAACCCGC TGCTGAGCTG GCAGCTCTGT GTCGCTAGGC 000080
000081 TTCGGCCCGG CCGCCGCCGC ACATAAGCTG CGAGGAGGAG CTTTACGACT TCCCGGTCTT CGGGGCCGGG CGCAGCAAGG 000160 000161 GCCAGACTCT GCGCTAGCAG GCGCTGCGCG CCAACCGGCC GGCACCTGTC GCAGAAGGTG CAACCGATCG CACTGTCGCG 000240 000241 CCGAAGCTCC TCAATGGCCA GCGCCAGCTG CAGCCCCGGC CGCCCACTCG CCTCACCTGA GCCTGGGAGC TTGAAAAATC 000320 000321 ACATTTGAGA AGAGGATTGG ATCCTAGCCA TAACATAAAT ATAAGGGTGG AACCAAAGTT TTAATCAAAG AAGGTGGTGT 000400 000401 TCAGTTGCTG CTTACAATAG TTGATACCCC AGGATTTGGA GATGCAGTGG ATAACAGTAA TTGCTGGCAG CCTGTTATCA 000480 000481 ATTACATTGA TATTAAATTT GAGGACTACC TAAATGCAGA ATCGCGAGTG AACAGATGTC AGATGCCTGG TAACAGGGTG 000560 000561 CAGTGTTGTT TATACTTCAT TGCTCCTTCA GGACATGGac cattacataa ctgaagactc ccaccttcag gcaggattgg 000640 000641 gtagtacgtg tttgtaacta cctggcattg cctttTGTTG AGGAAGGGTA GATGTCTACC CAAATGGAAT ATTGAGTATC 000720 000721 AGAGACTTCA AATGATAACT TTTGTTTGTT TGGAGAAAAT CTTGAGGACG TGATCACTGT ACAAAAGCAT GGCAAAATGA 000800 000801 GGAAACCACT GACAGGTGAA GAATTTGCAC AATGGAAAAC CACCTTGACC ATCTCATGAC TTTATACAGG AATCGGAGAC 000880 000881 ATCCAAGGCC ATTCCATTTC TAAATCACAC TTATCCCTCA ATCAAGTCAG TGACTGGATC ATCTCCTAAG GTTTCACCTG 000960 000961 CTTTGCATCA GTGAGTTGGA CTATGGATCA GGTACTGTGC TCAGCATCAG AAAATGGGAT GACAATGAAC AGAGTAACAG 001040 001041 GACTATATTT CTGAAAAAGG ATGAACTTAC TGGAAACAGG ATTGCgtgcc tgaaatatat ccaaatggat ataaatgtca 001120 001121 actcagttct gggctggaga tatagatttg gaatgcacca acaatgcaga tggtaatcct ggcatgcgag taggtgagat 001200 001201 catccaggga gATGGCCTAt aatgagagcc tacaacatgt cagGGCTCAA GCACCTCTTA CTGCCTCCTC ACTCTGGAAC 001280 001281 CAAATGCCTT ACTgtctgca ctgctcccca ttgccttccc tcccgcctca ccagttgatc cctatacctc cttcccaatg 001360 001361 acctccagga ggcctctaac ttacaggtga ggcaggcatt tttctattcc cttaacatga ccagttggtg tatcatggta 001440 001441 aattttattt ctctctctct ttctagactg tcagtatctt gggcttagag ttttatttat ttttttcagc tccacttcag 001520 001521 ctggcaaaac gcctagcata tagtaggaac taaaaaaatg ttttccgaat taatgaaAGA ATGTAGAATT GCAGCTCTGA 001600 001601 CTGTAACTAG TTTCCCATGA AGACTATAAT AGTCTATTAT CCTTTATTTT TCCTGGAG |
Predicted Small Protein
Name | NONHSAT098070_smProtein_1211:1360 |
Length | 50 |
Molecular weight | 5464.2837 |
Aromaticity | 0.0612244897959 |
Instability index | 84.7755102041 |
Isoelectric point | 6.79901123047 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0235697882757 |
Amino acid sequence | MAYNESLQHVRAQAPLTASSLWNQMPYCLHCSPLPSLPPHQLIPIPPSQ |
Secondary structure | LLLLHHHHHHHHLLLHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |