NONHSAT098164

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT098164

Source

NONCODE4.0

Same with

,

Classification

sense

Length

883 nt

Genomic location

chr4+:123249027..123254964

Exon number

3

Exons

123249027..123249512,123252481..123252696,123254784..123254964

Genome context

Sequence
000001 AAGTAAAATT TCATTCTGAT TTTTAGTATG TCAGTAGTGT AACTTTCTGT GGTTGGCCCT TTTGCTTCCT TCCTTGGTGT 000080
000081 ACTATTTCAT ATGTTCATGA ATCTGACCTT TCTTTCAGTT CAGAGTGAAG AAATTCAACT CTGAGataat ttttaaatgt 000160
000161 ttaaatttat atattttttc tttttttaat tGAAATATGA ATCTGATTCA TGTTTTTTCT TTTTACAATC AGTTTCCAGA 000240
000241 GGAGACAGAA CTGGACCTTT TGTCAGTAAC CATTGAAGGT CCATCCCATT ATTCATCAAA TAGTGAAGGA TCATGTTCTG 000320
000321 TGTTCAGTTC TCCCAAAACT CCAGGAGGCT TTTCACCAGG CATTCCTTTC CAAACTGAAG AGGGCCGACG GGATGACAGT 000400
000401 TTGTCTTCTA CCAGTGAAGA TTCCGAGAAG GATGAAAAAG ATGAAGACCA TGAGAGGGAA AGGTTTTATA TTTACAGGAA 000480
000481 ACCCTCACAT ACGTCTCGTA AAAAAGCAAC AGGCTTTGCT GCTGTTCATC AGCTATTTAC AGAACGCTGG CCAACAACAC 000560
000561 CAGTCAATAG AAGTCTTAGT GGCACAGCTA CAGAGAGAAA TATTGACTTT GAACTTGATA TACGGGTTGA AATTGATAGT 000640
000641 GGAAAATGTG TACTCCACCC AACCACCCTT CTACAAGAAC ATGATGATAT AAGTTTGAGA AGGAGTTATG ATCGAAGTTC 000720
000721 CAGGAGCTTA GATCAAGATT CACCTTCAAA AAAGAAGAAG TTTCAAACTA ATTATGCTTC TACCACCCAT TTAATGACCG 000800
000801 GCAAGAAAGT GCCATCATCT CTACAGACAA AGCCTAGTGA CTTAGAAACA ACAGTATTTT ACATTCCCGG AGTTGATGTA 000880
000881 AAG
[back to top]

Predicted Small Protein

Name NONHSAT098164_smProtein_392:691
Length 100
Molecular weight 11516.8572
Aromaticity 0.0808080808081
Instability index 50.6465656566
Isoelectric point 10.3422241211
Runs 15
Runs residual 0.017825311943
Runs probability 0.0383088971325
Amino acid sequence MTVCLLPVKIPRRMKKMKTMRGKGFIFTGNPHIRLVKKQQALLLFISYLQNAGQQHQSIE
VLVAQLQREILTLNLIYGLKLIVENVYSTQPPFYKNMMI
Secondary structure LEEEEELLLLHHHHHHHHHHLLLLEEELLLHHHHHHHHHHHHHHHHHHHHHHLLLLLHHH
HHHHHHHHHHHHHHHHHLLEEEEEEELLLLLLHHHLLLL
PRMN -
PiMo -