NONHSAT099404
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099404 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3527 nt |
Genomic location |
chr4+:180087449..180099709 |
Exon number |
5 |
Exons |
180087449..180088820,180089218..180090728,180090823..180091380,180093639..180093712,180099698..180099709 |
Genome context |
|
Sequence |
000001 tataaagcca aattgcaccc caaccacctt ggacacatgt tctcaggacc tactaagggc tgtgtcatgg gccatggtcc 000080
000081 ttcatatttg actcagaata aatctcttaa aatattttac caagtttcac tctttttgtc aacagcttta aggctgaaaa 000160 000161 atattctgtt gtttgtatGT Ttcatgcgcg tccgtgtaaa gagaccacca aacaggcttt gtgtgagcaa catggctgtt 000240 000241 tatttcacct gggtgcaggt aggctgagtc cgaaaacaga gtcagcaaag ggagataagg gtggggccgt tttataggat 000320 000321 ttgggtaggt aaaggaaaat tacagtcaaa gggggtttgt tctctggagg gcaggagtgg aggttgcaag gtgctcagtg 000400 000401 ggggtgattt ttgagccagg atgagccagg aaaaggactt tcacaaggta atgtcatcac ttaaggcaag gaccggccat 000480 000481 ttacacttct tttgtggtgg aatgtcatca gttaaggtgg ggcagggcat attcacttct tttgtgattc ttcagttact 000560 000561 tcaggccatc tgggcatata tgtgcaagtc acaggggatg cgatggcttg gcttgggctc agaggcctga cattcctgcc 000640 000641 ttcttatatt aataagaaaa acaaaacaaa atagtgttga agtgttgggg cggcgaaaat ttttgggggg tggtatcgag 000720 000721 agagagaatg gtcgatgttt ctcagggctg cttcaagcgg gattaggggc ggcgtgggac cctagagtgg gagagattaa 000800 000801 gctgaaggga ggtcttgcgg taaggggtga tattgtgggg atgttagaag aaacatttgt tgtatagaat gattggtgat 000880 000881 ggcctggata cggttttgta tgaattgaaa aactaaatgg aataacagaa ggagaaaaac aggtataaaa ggtctaagaa 000960 000961 ttgggaccac ttaggatatc tgattagaga gtgcttaagg agattcggca tagtCCTGCC AGCAAAGATc aaagagaggc 001040 001041 tgggacgagg ggtgcagggg aatagtggaa aaaggcatct ttaagatcaa gcacggaata gtgagttgtg gaggagggta 001120 001121 ttgaggacaa aagagtgtac gggttgggca ccacagggtg gataggcaaa acaatttggt tgataaggcg cagatcctga 001200 001201 actaacttgt aaggcttgtc tggttttaag acaggtgaaa tgggggaatt gtaaggagag tttataggct ttaaaaggca 001280 001281 attttgtagc aggcgagtga taacaggctt taatcttttt aaagcgtgct gctggatggg atattggcgt tgagtggggt 001360 001361 aagggtgatt agtgggctta ccttccactg tgagagttac ctgaagcttg gcgtccgtga tggtctaggg ggcttccgag 001440 001441 gcgatcaggc agcatcagtc ttcagccact aagccaagaa gatctgggaa ggagtcagtc agagagcctc gggccagagt 001520 001521 tccaggggct ctggcagtgg ctgtcaggtg agctgaacag tccgatttcc agtggggtcc cgcacagatg ggacacggct 001600 001601 taggaggaat cctgggctgc aggcattcct tggcctggtg gtcagatttc tggcacttgt agcaagctcc tgggggagga 001680 001681 ggttctgaag gaacacctgg cctctgcggt tcaggcgttt ggaagttctt gtatgctaga gatgtggcta gggtttgtct 001760 001761 cacagtggag gcgaggaatt gcaacttttt tttttattat tgtacacctt gaaggagagg ttaattaagt cctgttgtgg 001840 001841 ggtttgaagg ccagattcta atttttggag ttttatttaa tgtccggggc agattgggta ataaaatgta tattgagaat 001920 001921 aagacggcct tttgacattt taccgtctag ggctgtaaag catctcaggg ttgctgccga acgagccatg aactgggctg 002000 002001 ggtttttata tttgataaaa aagagcctaa atgcttctga tttgggataa agaaaaagga gcattaacct tgactatgcc 002080 002081 tttggctcca gccacctttt taagagtaaa ttgtgggcag gtgggggagg gctagtcaga gaatgaaact gtaagccgga 002160 002161 ccaggtgtga ggaggggagg cgataaaaag attacagggt ggaggagcag aggctgagga agaattggga cctagcttgg 002240 002241 cctggcaagg aggggagagg tcagatgggt ctgtagaaaa ggaagattag aaagactcag ctacgcttgg ggttgggact 002320 002321 gaggggacag gtgggaggga aagaaggaag atttgggacg agttgcactg ggcacagaga ctaggaaggg actgatgtgt 002400 002401 aaaagaatgc ctggacatca ggcacctcag accatttgtc aattttagga caagaattat ttagatcttg taggatggaa 002480 002481 aaattgaaag tgccattttc cggctatttg gaactactgt cgagtttgta ttggggtcaa gcggcattgc agaagaaaat 002560 002561 aagatgctta gattttaggt cagatgagag ttgaagaggt tttaagttct taagaatata ggctaaggga gaagaaggag 002640 002641 gaatggaagg tggaagcttg cccatagtaa aggaggcaag cccagagaaa agagcagaga cacggagaag gggtgggggg 002720 002721 ttcttgccct ccagaaaagc agagaaaggg ttggggcatg gaaataagga attggggcac agagataaga gggtggggca 002800 002801 cagaaataag ggattgggtg ttcttgcccc ctagaaaagc gggacttgcc gctaagggtg aaggagaagg ggttgagggg 002880 002881 tactaagggt gaaggaccaa ggcaggtgtc cctgcttggt ctgacacctt tgaaatgtgt gtgaataatc agagaggtgt 002960 002961 ccctgcaagg attaaatacc aagggaaggc tgccttccca gtccgtgacc gccgccggag ttttgggtcc acggataaaa 003040 003041 cgtgtctcct ttgtctctac cagaaaatga aaggaattga aattaagaga agggagtgat tgaagtgtgg cgccaagatt 003120 003121 gaaaggagaa agaggttgaa ggatagtgag ggaagctgga gaagagagta aaaagaggcc gcttaccgga tttgaaattg 003200 003201 gtgagatgtt tcttgggctg gtcggtctga ggacctgagg tcgtaggtgg atctttctca cagagcaaag agcaggagga 003280 003281 caggggattg atctcctaag ggaggtcccc cgatctgagt cacgacacca aaTTtcatgc gcgtccctgt gaagagacca 003360 003361 ccaaacaggc tttgtgtgag caacaaggct gtttatttca cctgggtgca ggcgggctga gtccaaagag agtcagcaaa 003440 003441 ggttttagat ttaagtcttt aatccattgt acattaattt ttgtttacag tattaagtga gaatccaact tcattgtttt 003520 003521 tctaaat |
Predicted Small Protein
Name | NONHSAT099404_smProtein_2642:2833 |
Length | 64 |
Molecular weight | 6781.6913 |
Aromaticity | 0.015873015873 |
Instability index | 67.2095238095 |
Isoelectric point | 10.9682006836 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.0365533600827 |
Amino acid sequence | MEGGSLPIVKEASPEKRAETRRRGGGFLPSRKAEKGLGHGNKELGHRDKRVGHRNKGLGV LAP |
Secondary structure | LLLLLLLEELLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEE ELL |
PRMN | - |
PiMo | - |